import pandas as pd import numpy as np from sklearn.cluster import AffinityPropagation import fire def affinity_clustering(similarities, output, damping=0.5, max_iter=100000, convergence_iter=30, preference_quantile=0.5, random_state=1968): ''' similarities: feather file with a dataframe of similarity scores preference_quantile: parameter controlling how many clusters to make. higher values = more clusters. 0.85 is a good value with 3000 subreddits. ''' df = pd.read_feather(similarities) n = df.shape[0] mat = np.array(df.drop('subreddit',1)) mat[range(n),range(n)] = 1 preference = np.quantile(mat,preference_quantile) clustering = AffinityPropagation(damping=damping, max_iter=max_iter, convergence_iter=convergence_iter, copy=False, preference=preference, affinity='precomputed', random_state=random_state).fit(mat) print(f"clustering took {clustering.n_iter_} iterations") clusters = clustering.labels_ print(f"found {len(set(clusters))} clusters") cluster_data = pd.DataFrame({'subreddit': df.subreddit,'cluster':clustering.labels_}) cluster_sizes = cluster_data.groupby("cluster").count() print(f"the largest cluster has {cluster_sizes.subreddit.max()} members") print(f"the median cluster has {cluster_sizes.subreddit.median()} members") print(f"{(cluster_sizes.subreddit==1).sum()} clusters have 1 member") cluster_data.to_feather(output) if __name__ == "__main__": fire.Fire(affinity_clustering)