import pyarrow import altair as alt alt.data_transformers.disable_max_rows() alt.data_transformers.enable('default') from sklearn.neighbors import NearestNeighbors import pandas as pd from numpy import random import fire import numpy as np def base_plot(plot_data): # base = base.encode(alt.Color(field='color',type='nominal',scale=alt.Scale(scheme='category10'))) cluster_dropdown = alt.binding_select(options=[str(c) for c in sorted(set(plot_data.cluster))]) # subreddit_dropdown = alt.binding_select(options=sorted(plot_data.subreddit)) cluster_click_select = alt.selection_single(on='click',fields=['cluster'], bind=cluster_dropdown, name=' ') # cluster_select = alt.selection_single(fields=['cluster'], bind=cluster_dropdown, name='cluster') # cluster_select_and = cluster_click_select & cluster_select # # subreddit_select = alt.selection_single(on='click',fields=['subreddit'],bind=subreddit_dropdown,name='subreddit_click') color = alt.condition(cluster_click_select , alt.Color(field='color',type='nominal',scale=alt.Scale(scheme='category10')), alt.value("lightgray")) base = alt.Chart(plot_data).mark_text().encode( alt.X('x',axis=alt.Axis(grid=False),scale=alt.Scale(domain=(-65,65))), alt.Y('y',axis=alt.Axis(grid=False),scale=alt.Scale(domain=(-65,65))), color=color, text='subreddit') base = base.add_selection(cluster_click_select) return base def zoom_plot(plot_data): chart = base_plot(plot_data) chart = chart.interactive() chart = chart.properties(width=1275,height=800) return chart def viewport_plot(plot_data): selector1 = alt.selection_interval(encodings=['x','y'],init={'x':(-65,65),'y':(-65,65)}) selectorx2 = alt.selection_interval(encodings=['x'],init={'x':(30,40)}) selectory2 = alt.selection_interval(encodings=['y'],init={'y':(-20,0)}) base = base_plot(plot_data) viewport = base.mark_point(fillOpacity=0.2,opacity=0.2).encode( alt.X('x',axis=alt.Axis(grid=False)), alt.Y('y',axis=alt.Axis(grid=False)), ) viewport = viewport.properties(width=600,height=400) viewport1 = viewport.add_selection(selector1) viewport2 = viewport.encode( alt.X('x',axis=alt.Axis(grid=False),scale=alt.Scale(domain=selector1)), alt.Y('y',axis=alt.Axis(grid=False),scale=alt.Scale(domain=selector1)) ) viewport2 = viewport2.add_selection(selectorx2) viewport2 = viewport2.add_selection(selectory2) sr = base.encode(alt.X('x',axis=alt.Axis(grid=False),scale=alt.Scale(domain=selectorx2)), alt.Y('y',axis=alt.Axis(grid=False),scale=alt.Scale(domain=selectory2)) ) sr = sr.properties(width=1275,height=600) chart = (viewport1 | viewport2) & sr return chart def assign_cluster_colors(tsne_data, clusters, n_colors, n_neighbors = 4): tsne_data = tsne_data.merge(clusters,on='subreddit') centroids = tsne_data.groupby('cluster').agg({'x':np.mean,'y':np.mean}) color_ids = np.arange(n_colors) distances = np.empty(shape=(centroids.shape[0],centroids.shape[0])) groups = tsne_data.groupby('cluster') points = np.array(tsne_data.loc[:,['x','y']]) centers = np.array(centroids.loc[:,['x','y']]) # point x centroid point_center_distances = np.linalg.norm((points[:,None,:] - centers[None,:,:]),axis=-1) # distances is cluster x point for gid, group in groups: c_dists = point_center_distances[group.index.values,:].min(axis=0) distances[group.cluster.values[0],] = c_dists # nbrs = NearestNeighbors(n_neighbors=n_neighbors).fit(centroids) # distances, indices = nbrs.kneighbors() nearest = distances.argpartition(n_neighbors,0) indices = nearest[:n_neighbors,:].T # neighbor_distances = np.copy(distances) # neighbor_distances.sort(0) # neighbor_distances = neighbor_distances[0:n_neighbors,:] # nbrs = NearestNeighbors(n_neighbors=n_neighbors,metric='precomputed').fit(distances) # distances, indices = nbrs.kneighbors() color_assignments = np.repeat(-1,len(centroids)) for i in range(len(centroids)): knn = indices[i] knn_colors = color_assignments[knn] available_colors = color_ids[list(set(color_ids) - set(knn_colors))] if(len(available_colors) > 0): color_assignments[i] = available_colors[0] else: raise Exception("Can't color this many neighbors with this many colors") centroids = centroids.reset_index() colors = centroids.loc[:,['cluster']] colors['color'] = color_assignments tsne_data = tsne_data.merge(colors,on='cluster') return(tsne_data) def build_visualization(tsne_data, clusters, output): # tsne_data = "/gscratch/comdata/output/reddit_tsne/subreddit_author_tf_similarities_10000.feather" # clusters = "/gscratch/comdata/output/reddit_clustering/subreddit_author_tf_similarities_10000.feather" tsne_data = pd.read_feather(tsne_data) clusters = pd.read_feather(clusters) tsne_data = assign_cluster_colors(tsne_data,clusters,10,8) # sr_per_cluster = tsne_data.groupby('cluster').subreddit.count().reset_index() # sr_per_cluster = sr_per_cluster.rename(columns={'subreddit':'cluster_size'}) tsne_data = tsne_data.merge(sr_per_cluster,on='cluster') term_zoom_plot = zoom_plot(tsne_data) term_zoom_plot.save(output) term_viewport_plot = viewport_plot(tsne_data) term_viewport_plot.save(output.replace(".html","_viewport.html")) if __name__ == "__main__": fire.Fire(build_visualization) # commenter_data = pd.read_feather("tsne_author_fit.feather") # clusters = pd.read_feather('author_3000_clusters.feather') # commenter_data = assign_cluster_colors(commenter_data,clusters,10,8) # commenter_zoom_plot = zoom_plot(commenter_data) # commenter_viewport_plot = viewport_plot(commenter_data) # commenter_zoom_plot.save("subreddit_commenters_tsne_3000.html") # commenter_viewport_plot.save("subreddit_commenters_tsne_3000_viewport.html") # chart = chart.properties(width=10000,height=10000) # chart.save("test_tsne_whole.svg")