from pyspark.sql import functions as f from pyspark.sql import SparkSession from pyspark.sql import Window import numpy as np import pyarrow import pandas as pd import fire from itertools import islice from pathlib import Path from similarities_helper import cosine_similarities, prep_tfidf_entries, read_tfidf_matrix, column_similarities spark = SparkSession.builder.getOrCreate() conf = spark.sparkContext.getConf() # outfile = '/gscratch/comdata/users/nathante/test_similarities_500.feather'; min_df = None; included_subreddits=None; similarity_threshold=0; def author_cosine_similarities(outfile, min_df = None, included_subreddits=None, similarity_threshold=0, topN=500): ''' Compute similarities between subreddits based on tfi-idf vectors of author comments included_subreddits : string Text file containing a list of subreddits to include (one per line) if included_subreddits is None then do the top 500 subreddits similarity_threshold : double (default = 0) set > 0 for large numbers of subreddits to get an approximate solution using the DIMSUM algorithm https://stanford.edu/~rezab/papers/dimsum.pdf. If similarity_threshold=0 we get an exact solution using an O(N^2) algorithm. min_df : int (default = 0.1 * (number of included_subreddits) exclude terms that appear in fewer than this number of documents. outfile: string where to output csv and feather outputs ''' spark = SparkSession.builder.getOrCreate() conf = spark.sparkContext.getConf() print(outfile) tfidf = spark.read.parquet('/gscratch/comdata/users/nathante/subreddit_tfidf_authors.parquet') if included_subreddits is None: rankdf = pd.read_csv("/gscratch/comdata/users/nathante/cdsc-reddit/subreddits_by_num_comments.csv") included_subreddits = set(rankdf.loc[rankdf.comments_rank <= topN,'subreddit'].values) else: included_subreddits = set(open(included_subreddits)) print("creating temporary parquet with matrix indicies") tempdir = prep_tfidf_entries(tfidf, 'author', min_df, included_subreddits) tfidf = spark.read.parquet(tempdir.name) subreddit_names = tfidf.select(['subreddit','subreddit_id_new']).distinct().toPandas() subreddit_names = subreddit_names.sort_values("subreddit_id_new") subreddit_names['subreddit_id_new'] = subreddit_names['subreddit_id_new'] - 1 spark.stop() print("loading matrix") mat = read_tfidf_matrix(tempdir.name,'author') print('computing similarities') sims = column_similarities(mat) del mat sims = pd.DataFrame(sims.todense()) sims = sims.rename({i:sr for i, sr in enumerate(subreddit_names.subreddit.values)},axis=1) sims['subreddit'] = subreddit_names.subreddit.values p = Path(outfile) output_feather = Path(str(p).replace("".join(p.suffixes), ".feather")) output_csv = Path(str(p).replace("".join(p.suffixes), ".csv")) output_parquet = Path(str(p).replace("".join(p.suffixes), ".parquet")) sims.to_feather(outfile) tempdir.cleanup() # print(outfile) # tfidf = spark.read.parquet('/gscratch/comdata/users/nathante/subreddit_tfidf_authors.parquet') # if included_subreddits is None: # included_subreddits = list(islice(open("/gscratch/comdata/users/nathante/cdsc-reddit/top_25000_subs_by_comments.txt"),topN)) # included_subreddits = {s.strip('\n') for s in included_subreddits} # else: # included_subreddits = set(open(included_subreddits)) # sim_dist, tfidf = cosine_similarities(tfidf, 'author', min_df, included_subreddits, similarity_threshold) # p = Path(outfile) # output_feather = Path(str(p).replace("".join(p.suffixes), ".feather")) # output_csv = Path(str(p).replace("".join(p.suffixes), ".csv")) # output_parquet = Path(str(p).replace("".join(p.suffixes), ".parquet")) # sim_dist = sim_dist.entries.toDF() # sim_dist = sim_dist.repartition(1) # sim_dist.write.parquet(str(output_parquet),mode='overwrite',compression='snappy') # #instead of toLocalMatrix() why not read as entries and put strait into numpy # sim_entries = pd.read_parquet(output_parquet) # df = tfidf.select('subreddit','subreddit_id_new').distinct().toPandas() # spark.stop() # df['subreddit_id_new'] = df['subreddit_id_new'] - 1 # df = df.sort_values('subreddit_id_new').reset_index(drop=True) # df = df.set_index('subreddit_id_new') # similarities = sim_entries.join(df, on='i') # similarities = similarities.rename(columns={'subreddit':"subreddit_i"}) # similarities = similarities.join(df, on='j') # similarities = similarities.rename(columns={'subreddit':"subreddit_j"}) # similarities.to_feather(output_feather) # similarities.to_csv(output_csv) # return similarities if __name__ == '__main__': fire.Fire(author_cosine_similarities)