From 784458f2067287871dcfeefe8348fcc71a230244 Mon Sep 17 00:00:00 2001 From: Benjamin Mako Hill Date: Wed, 1 Apr 2020 07:51:20 -0700 Subject: [PATCH 01/16] renamed the wikipedia_views module to wikipedia --- .../analysis/output/top10_views_by_project_date.csv | 0 {wikipedia_views => wikipedia}/analysis/pageview_example.R | 0 {wikipedia_views => wikipedia}/logs/placeholder | 0 .../resources/enwp_wikiproject_covid19_articles.txt | 0 .../scripts/fetch_enwiki_daily_views.py | 4 ++-- .../scripts/fetch_enwiki_revisions.py | 4 ++-- {wikipedia_views => wikipedia}/scripts/wikiproject_scraper.py | 2 +- 7 files changed, 5 insertions(+), 5 deletions(-) rename {wikipedia_views => wikipedia}/analysis/output/top10_views_by_project_date.csv (100%) rename {wikipedia_views => wikipedia}/analysis/pageview_example.R (100%) rename {wikipedia_views => wikipedia}/logs/placeholder (100%) rename {wikipedia_views => wikipedia}/resources/enwp_wikiproject_covid19_articles.txt (100%) rename {wikipedia_views => wikipedia}/scripts/fetch_enwiki_daily_views.py (96%) rename {wikipedia_views => wikipedia}/scripts/fetch_enwiki_revisions.py (97%) rename {wikipedia_views => wikipedia}/scripts/wikiproject_scraper.py (97%) diff --git a/wikipedia_views/analysis/output/top10_views_by_project_date.csv b/wikipedia/analysis/output/top10_views_by_project_date.csv similarity index 100% rename from wikipedia_views/analysis/output/top10_views_by_project_date.csv rename to wikipedia/analysis/output/top10_views_by_project_date.csv diff --git a/wikipedia_views/analysis/pageview_example.R b/wikipedia/analysis/pageview_example.R similarity index 100% rename from wikipedia_views/analysis/pageview_example.R rename to wikipedia/analysis/pageview_example.R diff --git a/wikipedia_views/logs/placeholder b/wikipedia/logs/placeholder similarity index 100% rename from wikipedia_views/logs/placeholder rename to wikipedia/logs/placeholder diff --git a/wikipedia_views/resources/enwp_wikiproject_covid19_articles.txt b/wikipedia/resources/enwp_wikiproject_covid19_articles.txt similarity index 100% rename from wikipedia_views/resources/enwp_wikiproject_covid19_articles.txt rename to wikipedia/resources/enwp_wikiproject_covid19_articles.txt diff --git a/wikipedia_views/scripts/fetch_enwiki_daily_views.py b/wikipedia/scripts/fetch_enwiki_daily_views.py similarity index 96% rename from wikipedia_views/scripts/fetch_enwiki_daily_views.py rename to wikipedia/scripts/fetch_enwiki_daily_views.py index d8c185a..c250bfe 100755 --- a/wikipedia_views/scripts/fetch_enwiki_daily_views.py +++ b/wikipedia/scripts/fetch_enwiki_daily_views.py @@ -25,8 +25,8 @@ from csv import DictWriter def parse_args(): parser = argparse.ArgumentParser(description='Call the views API to collect Wikipedia view data.') - parser.add_argument('-o', '--output_folder', help='Where to save output', default="wikipedia_views/data", type=str) - parser.add_argument('-i', '--article_file', help='File listing article names', default="wikipedia_views/resources/enwp_wikiproject_covid19_articles.txt", type=str) + parser.add_argument('-o', '--output_folder', help='Where to save output', default="wikipedia/data", type=str) + parser.add_argument('-i', '--article_file', help='File listing article names', default="wikipedia/resources/enwp_wikiproject_covid19_articles.txt", type=str) parser.add_argument('-d', '--query_date', help='Date if not yesterday, in YYYYMMDD format.', type=str) parser.add_argument('-L', '--logging_level', help='Logging level. Options are debug, info, warning, error, critical. Default: info.', default='info', type=str), parser.add_argument('-W', '--logging_destination', help='Logging destination file. (default: standard error)', type=str), diff --git a/wikipedia_views/scripts/fetch_enwiki_revisions.py b/wikipedia/scripts/fetch_enwiki_revisions.py similarity index 97% rename from wikipedia_views/scripts/fetch_enwiki_revisions.py rename to wikipedia/scripts/fetch_enwiki_revisions.py index 77c5664..cbb283d 100755 --- a/wikipedia_views/scripts/fetch_enwiki_revisions.py +++ b/wikipedia/scripts/fetch_enwiki_revisions.py @@ -24,8 +24,8 @@ from mw import api def parse_args(): parser = argparse.ArgumentParser(description='Call the views API to collect Wikipedia revision data.') - parser.add_argument('-o', '--output_folder', help='Where to save output', default="wikipedia_views/data", type=str) - parser.add_argument('-i', '--article_file', help='File listing article names', default="wikipedia_views/resources/enwp_wikiproject_covid19_articles.txt", type=str) + parser.add_argument('-o', '--output_folder', help='Where to save output', default="wikipedia/data", type=str) + parser.add_argument('-i', '--article_file', help='File listing article names', default="wikipedia/resources/enwp_wikiproject_covid19_articles.txt", type=str) parser.add_argument('-d', '--query_date', help='Date if not yesterday, in YYYYMMDD format.', type=str) parser.add_argument('-L', '--logging_level', help='Logging level. Options are debug, info, warning, error, critical. Default: info.', default='info', type=str), parser.add_argument('-W', '--logging_destination', help='Logging destination file. (default: standard error)', type=str), diff --git a/wikipedia_views/scripts/wikiproject_scraper.py b/wikipedia/scripts/wikiproject_scraper.py similarity index 97% rename from wikipedia_views/scripts/wikiproject_scraper.py rename to wikipedia/scripts/wikiproject_scraper.py index c9eaaac..6e01051 100755 --- a/wikipedia_views/scripts/wikiproject_scraper.py +++ b/wikipedia/scripts/wikiproject_scraper.py @@ -29,7 +29,7 @@ from bs4 import BeautifulSoup def parse_args(): parser = argparse.ArgumentParser(description='Get a list of pages tracked by the COVID-19 Wikiproject.') - parser.add_argument('-o', '--output_file', help='Where to save output', default="wikipedia_views/resources/enwp_wikiproject_covid19_articles.txt", type=str) + parser.add_argument('-o', '--output_file', help='Where to save output', default="wikipedia/resources/enwp_wikiproject_covid19_articles.txt", type=str) parser.add_argument('-L', '--logging_level', help='Logging level. Options are debug, info, warning, error, critical. Default: info.', default='info'), parser.add_argument('-W', '--logging_destination', help='Logging destination file. (default: standard error)', type=str), args = parser.parse_args() -- 2.39.5 From 268f9e1cf319fb155e0b2f729d429257c07555bf Mon Sep 17 00:00:00 2001 From: Benjamin Mako Hill Date: Wed, 1 Apr 2020 07:52:15 -0700 Subject: [PATCH 02/16] added gitignore for wikipedia/data directory --- .gitignore | 1 + 1 file changed, 1 insertion(+) create mode 100644 .gitignore diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..cca401a --- /dev/null +++ b/.gitignore @@ -0,0 +1 @@ +wikipedia/data/ -- 2.39.5 From 4e1b7fbdfe346a1b0546a8afb24f8c2f10138b79 Mon Sep 17 00:00:00 2001 From: Benjamin Mako Hill Date: Wed, 1 Apr 2020 08:18:05 -0700 Subject: [PATCH 03/16] fixed typo in debug message --- wikipedia/scripts/fetch_enwiki_revisions.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/wikipedia/scripts/fetch_enwiki_revisions.py b/wikipedia/scripts/fetch_enwiki_revisions.py index cbb283d..fdd4ad5 100755 --- a/wikipedia/scripts/fetch_enwiki_revisions.py +++ b/wikipedia/scripts/fetch_enwiki_revisions.py @@ -121,7 +121,7 @@ def main(): tsv_writer.writeheader() for article in article_list: - logging.info(f"pulling revisiosn for: {article}") + logging.info(f"pulling revisions for: {article}") for rev in get_revisions_for_page(article): logging.debug(f"processing raw revision: {rev}") -- 2.39.5 From 06d2fd156335b6bb83966ea89f4b7283055ad946 Mon Sep 17 00:00:00 2001 From: Benjamin Mako Hill Date: Wed, 1 Apr 2020 10:47:33 -0500 Subject: [PATCH 04/16] fix bugs with the date stamps --- wikipedia/scripts/fetch_enwiki_daily_views.py | 4 +--- wikipedia/scripts/fetch_enwiki_revisions.py | 6 ++---- 2 files changed, 3 insertions(+), 7 deletions(-) diff --git a/wikipedia/scripts/fetch_enwiki_daily_views.py b/wikipedia/scripts/fetch_enwiki_daily_views.py index c250bfe..225b06d 100755 --- a/wikipedia/scripts/fetch_enwiki_daily_views.py +++ b/wikipedia/scripts/fetch_enwiki_daily_views.py @@ -47,8 +47,6 @@ def main(): yesterday = datetime.datetime.today() - datetime.timedelta(days=1) queryDate = yesterday.strftime("%Y%m%d") - queryDate = queryDate + "00" #requires specifying hours - #handle -L loglevel_mapping = { 'debug' : logging.DEBUG, 'info' : logging.INFO, @@ -92,7 +90,7 @@ def main(): #2 Repeatedly call the API with that list of names for a in articleList: a = a.strip("\"\n") #destringify - url= f"https://wikimedia.org/api/rest_v1/metrics/pageviews/per-article/en.wikipedia/all-access/all-agents/{a}/daily/{queryDate}/{queryDate}" + url= f"https://wikimedia.org/api/rest_v1/metrics/pageviews/per-article/en.wikipedia/all-access/all-agents/{a}/daily/{queryDate}00/{queryDate}00" response = requests.get(url) if response.ok: diff --git a/wikipedia/scripts/fetch_enwiki_revisions.py b/wikipedia/scripts/fetch_enwiki_revisions.py index cbb283d..3ecd04f 100755 --- a/wikipedia/scripts/fetch_enwiki_revisions.py +++ b/wikipedia/scripts/fetch_enwiki_revisions.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python3 +#!yusr/bin/env python3 ############################################################################### # @@ -44,8 +44,6 @@ def main(): yesterday = datetime.datetime.today() - datetime.timedelta(days=1) query_date = yesterday.strftime("%Y%m%d") - query_data = query_date + "00" #requires specifying hours - #handle -L loglevel_mapping = { 'debug' : logging.DEBUG, 'info' : logging.INFO, @@ -73,7 +71,7 @@ def main(): logging.info(f"Last commit: {export_git_hash}") json_output_filename = os.path.join(output_path, f"digobs_covid19-wikipedia-enwiki_revisions-{query_date}.json") - tsv_output_filename = os.path.join(output_path, f"digobs_covid19-wikipedia-enwiki_revisions-{query_data}.tsv") + tsv_output_filename = os.path.join(output_path, f"digobs_covid19-wikipedia-enwiki_revisions-{query_date}.tsv") api_session = api.Session("https://en.wikipedia.org/w/api.php") -- 2.39.5 From 04e00f363bec0c5aa349e6c85f9a78d6ee70c3fd Mon Sep 17 00:00:00 2001 From: Benjamin Mako Hill Date: Wed, 1 Apr 2020 15:14:05 -0500 Subject: [PATCH 05/16] address confusion with date The timestamps in files should be the day that the exports are done. For the view data, the query date needs to be the day before but this shouldn't be the timestamp we use in files, etc. --- wikipedia/scripts/fetch_enwiki_daily_views.py | 14 +++++++------- wikipedia/scripts/fetch_enwiki_revisions.py | 14 ++++---------- 2 files changed, 11 insertions(+), 17 deletions(-) diff --git a/wikipedia/scripts/fetch_enwiki_daily_views.py b/wikipedia/scripts/fetch_enwiki_daily_views.py index 225b06d..f766ed8 100755 --- a/wikipedia/scripts/fetch_enwiki_daily_views.py +++ b/wikipedia/scripts/fetch_enwiki_daily_views.py @@ -23,7 +23,6 @@ from csv import DictWriter #import feather #TBD def parse_args(): - parser = argparse.ArgumentParser(description='Call the views API to collect Wikipedia view data.') parser.add_argument('-o', '--output_folder', help='Where to save output', default="wikipedia/data", type=str) parser.add_argument('-i', '--article_file', help='File listing article names', default="wikipedia/resources/enwp_wikiproject_covid19_articles.txt", type=str) @@ -42,10 +41,10 @@ def main(): #handle -d if args.query_date: - queryDate = args.query_date + query_date = args.query_date else: yesterday = datetime.datetime.today() - datetime.timedelta(days=1) - queryDate = yesterday.strftime("%Y%m%d") + query_date = yesterday.strftime("%Y%m%d") #handle -L loglevel_mapping = { 'debug' : logging.DEBUG, @@ -69,13 +68,14 @@ def main(): export_git_hash = subprocess.check_output(['git', 'rev-parse', 'HEAD']).decode().strip() export_git_short_hash = subprocess.check_output(['git', 'rev-parse', '--short', 'HEAD']).decode().strip() export_time = str(datetime.datetime.now()) + export_date = datetime.datetime.today().strftime("%Y%m%d") logging.info(f"Starting run at {export_time}") logging.info(f"Last commit: {export_git_hash}") #1 Load up the list of article names - j_outfilename = os.path.join(outputPath, f"digobs_covid19-wikipedia-enwiki_dailyviews-{queryDate}.json") - t_outfilename = os.path.join(outputPath, f"digobs_covid19-wikipedia-enwiki_dailyviews-{queryDate}.tsv") + j_outfilename = os.path.join(outputPath, f"digobs_covid19-wikipedia-enwiki_dailyviews-{export_date}.json") + t_outfilename = os.path.join(outputPath, f"digobs_covid19-wikipedia-enwiki_dailyviews-{export_date}.tsv") with open(articleFile, 'r') as infile: articleList = list(infile) @@ -90,7 +90,7 @@ def main(): #2 Repeatedly call the API with that list of names for a in articleList: a = a.strip("\"\n") #destringify - url= f"https://wikimedia.org/api/rest_v1/metrics/pageviews/per-article/en.wikipedia/all-access/all-agents/{a}/daily/{queryDate}00/{queryDate}00" + url= f"https://wikimedia.org/api/rest_v1/metrics/pageviews/per-article/en.wikipedia/all-access/all-agents/{a}/daily/{query_date}00/{query_date}00" response = requests.get(url) if response.ok: @@ -115,7 +115,7 @@ def main(): # write out of the csv file dw.writerow(jd) - # f_Out = outputPath + "dailyviews" + queryDate + ".feather" + # f_Out = outputPath + "dailyviews" + query_date + ".feather" # read the json back in and make a feather file? logging.debug(f"Run complete at {datetime.datetime.now()}") logging.info(f"Processed {success} successful URLs and {failure} failures.") diff --git a/wikipedia/scripts/fetch_enwiki_revisions.py b/wikipedia/scripts/fetch_enwiki_revisions.py index 3ecd04f..e8f177d 100755 --- a/wikipedia/scripts/fetch_enwiki_revisions.py +++ b/wikipedia/scripts/fetch_enwiki_revisions.py @@ -1,4 +1,4 @@ -#!yusr/bin/env python3 +#!/usr/bin/env python3 ############################################################################### # @@ -26,7 +26,6 @@ def parse_args(): parser = argparse.ArgumentParser(description='Call the views API to collect Wikipedia revision data.') parser.add_argument('-o', '--output_folder', help='Where to save output', default="wikipedia/data", type=str) parser.add_argument('-i', '--article_file', help='File listing article names', default="wikipedia/resources/enwp_wikiproject_covid19_articles.txt", type=str) - parser.add_argument('-d', '--query_date', help='Date if not yesterday, in YYYYMMDD format.', type=str) parser.add_argument('-L', '--logging_level', help='Logging level. Options are debug, info, warning, error, critical. Default: info.', default='info', type=str), parser.add_argument('-W', '--logging_destination', help='Logging destination file. (default: standard error)', type=str), args = parser.parse_args() @@ -37,12 +36,6 @@ def main(): output_path = args.output_folder article_filename = args.article_file - #handle -d - if args.query_date: - query_date = args.query_date - else: - yesterday = datetime.datetime.today() - datetime.timedelta(days=1) - query_date = yesterday.strftime("%Y%m%d") #handle -L loglevel_mapping = { 'debug' : logging.DEBUG, @@ -66,12 +59,13 @@ def main(): export_git_hash = subprocess.check_output(['git', 'rev-parse', 'HEAD']).decode().strip() export_git_short_hash = subprocess.check_output(['git', 'rev-parse', '--short', 'HEAD']).decode().strip() export_time = str(datetime.datetime.now()) + export_date = datetime.datetime.today().strftime("%Y%m%d") logging.info(f"Starting run at {export_time}") logging.info(f"Last commit: {export_git_hash}") - json_output_filename = os.path.join(output_path, f"digobs_covid19-wikipedia-enwiki_revisions-{query_date}.json") - tsv_output_filename = os.path.join(output_path, f"digobs_covid19-wikipedia-enwiki_revisions-{query_date}.tsv") + json_output_filename = os.path.join(output_path, f"digobs_covid19-wikipedia-enwiki_revisions-{export_date}.json") + tsv_output_filename = os.path.join(output_path, f"digobs_covid19-wikipedia-enwiki_revisions-{export_date}.tsv") api_session = api.Session("https://en.wikipedia.org/w/api.php") -- 2.39.5 From 141871eda6754b95f1617e354fe1d9728d0fd8e1 Mon Sep 17 00:00:00 2001 From: Benjamin Mako Hill Date: Wed, 1 Apr 2020 15:15:11 -0500 Subject: [PATCH 06/16] add two small shellscripts for automation - Added two bash scripts usable as cronjobs to automate the production of revisions and view data. These commands automate the process of running code and copying material --- cron-wikipedia_revisions.sh | 17 +++++++++++++++++ cron-wikipedia_views.sh | 16 ++++++++++++++++ 2 files changed, 33 insertions(+) create mode 100644 cron-wikipedia_revisions.sh create mode 100644 cron-wikipedia_views.sh diff --git a/cron-wikipedia_revisions.sh b/cron-wikipedia_revisions.sh new file mode 100644 index 0000000..71ee752 --- /dev/null +++ b/cron-wikipedia_revisions.sh @@ -0,0 +1,17 @@ +#!/bin/bash -x + +TZ="UTC" +date_string=$(date +%Y%m%d) + +./wikipedia/scripts/wikiproject_scraper.py 2> >(tee wikipedia/logs/enwp-wikiproject_scraper-${date_string}.log) + +revs_log="enwp-revisions-${date_string}.log" +./wikipedia/scripts/fetch_enwiki_revisions.py 2> >(tee wikipedia/logs/${rev_log}) +cp wikipedia/logs/${rev_log} /var/www/covid19/wikipedia/logs/ + +revs_tsv="digobs_covid19-wikipedia-enwiki_revisions-${date_string}.tsv" +cp wikipedia/data/${revs_tsv} /var/www/covid19/wikipedia + +revs_json="digobs_covid19-wikipedia-enwiki_revisions-${date_string}.json" +xz wikipedia/data/${revs_json} +cp wikipedia/data/${revs_json}.xz /var/www/covid19/wikipedia diff --git a/cron-wikipedia_views.sh b/cron-wikipedia_views.sh new file mode 100644 index 0000000..ec3d4ec --- /dev/null +++ b/cron-wikipedia_views.sh @@ -0,0 +1,16 @@ +#!/bin/bash -x + +TZ="UTC" +date_string=$(date +%Y%m%d) + +./wikipedia/scripts/wikiproject_scraper.py 2> >(tee wikipedia/logs/enwp-wikiproject_scraper-${date_string}.log) + +# get the list of files +view_log="enwp-daily_views-${date_string}.log" +./wikipedia/scripts/fetch_enwiki_daily_views.py 2> >(tee wikipedia/logs/${view_log}) +cp wikipedia/logs/${view_log} /var/www/covid19/wikipedia/logs/${view_log} +cp wikipedia/data/digobs_covid19-wikipedia-enwiki_dailyviews-${date_string}.tsv /var/www/covid19/wikipedia/ + +# xz wikipedia/data/digobs_covid19-wikipedia-enwiki_dailyviews-${date_string}.json +cp wikipedia/data/digobs_covid19-wikipedia-enwiki_dailyviews-${date_string}.json /var/www/covid19/wikipedia/ + -- 2.39.5 From 95d37cff7aa215b9c411e863f7d1ba702de61405 Mon Sep 17 00:00:00 2001 From: Benjamin Mako Hill Date: Wed, 1 Apr 2020 15:49:02 -0500 Subject: [PATCH 07/16] change copy to move in cron scripts --- cron-wikipedia_revisions.sh | 6 +++--- cron-wikipedia_views.sh | 6 +++--- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/cron-wikipedia_revisions.sh b/cron-wikipedia_revisions.sh index 71ee752..a53bc3f 100644 --- a/cron-wikipedia_revisions.sh +++ b/cron-wikipedia_revisions.sh @@ -7,11 +7,11 @@ date_string=$(date +%Y%m%d) revs_log="enwp-revisions-${date_string}.log" ./wikipedia/scripts/fetch_enwiki_revisions.py 2> >(tee wikipedia/logs/${rev_log}) -cp wikipedia/logs/${rev_log} /var/www/covid19/wikipedia/logs/ +mv wikipedia/logs/${revs_log} /var/www/covid19/wikipedia/logs/ revs_tsv="digobs_covid19-wikipedia-enwiki_revisions-${date_string}.tsv" -cp wikipedia/data/${revs_tsv} /var/www/covid19/wikipedia +mv wikipedia/data/${revs_tsv} /var/www/covid19/wikipedia revs_json="digobs_covid19-wikipedia-enwiki_revisions-${date_string}.json" xz wikipedia/data/${revs_json} -cp wikipedia/data/${revs_json}.xz /var/www/covid19/wikipedia +mv wikipedia/data/${revs_json}.xz /var/www/covid19/wikipedia diff --git a/cron-wikipedia_views.sh b/cron-wikipedia_views.sh index ec3d4ec..3611657 100644 --- a/cron-wikipedia_views.sh +++ b/cron-wikipedia_views.sh @@ -8,9 +8,9 @@ date_string=$(date +%Y%m%d) # get the list of files view_log="enwp-daily_views-${date_string}.log" ./wikipedia/scripts/fetch_enwiki_daily_views.py 2> >(tee wikipedia/logs/${view_log}) -cp wikipedia/logs/${view_log} /var/www/covid19/wikipedia/logs/${view_log} -cp wikipedia/data/digobs_covid19-wikipedia-enwiki_dailyviews-${date_string}.tsv /var/www/covid19/wikipedia/ +mv wikipedia/logs/${view_log} /var/www/covid19/wikipedia/logs/${view_log} +mv wikipedia/data/digobs_covid19-wikipedia-enwiki_dailyviews-${date_string}.tsv /var/www/covid19/wikipedia/ # xz wikipedia/data/digobs_covid19-wikipedia-enwiki_dailyviews-${date_string}.json -cp wikipedia/data/digobs_covid19-wikipedia-enwiki_dailyviews-${date_string}.json /var/www/covid19/wikipedia/ +mv wikipedia/data/digobs_covid19-wikipedia-enwiki_dailyviews-${date_string}.json /var/www/covid19/wikipedia/ -- 2.39.5 From 3f19805d363a51f037e4df23a15b1a4157d82723 Mon Sep 17 00:00:00 2001 From: Benjamin Mako Hill Date: Wed, 1 Apr 2020 15:49:28 -0500 Subject: [PATCH 08/16] fix bug in rev scraper script Bug was a break, added for debugging, that caused the script to only work for the first article. --- wikipedia/scripts/fetch_enwiki_revisions.py | 2 -- 1 file changed, 2 deletions(-) diff --git a/wikipedia/scripts/fetch_enwiki_revisions.py b/wikipedia/scripts/fetch_enwiki_revisions.py index 44528e8..3793c0b 100755 --- a/wikipedia/scripts/fetch_enwiki_revisions.py +++ b/wikipedia/scripts/fetch_enwiki_revisions.py @@ -141,8 +141,6 @@ def main(): rev['export_commit'] = export_git_short_hash tsv_writer.writerow({k: rev[k] for k in tsv_fields}) - break if __name__ == "__main__": - main() -- 2.39.5 From d655e1ce9332f039a2bd271776752b3f74863848 Mon Sep 17 00:00:00 2001 From: Benjamin Mako Hill Date: Wed, 1 Apr 2020 16:39:53 -0500 Subject: [PATCH 09/16] tweaks to revision export code - flags were not being exported (e.g., minor, anon) - broke with hidden/deleted user names --- wikipedia/scripts/fetch_enwiki_revisions.py | 21 +++++++++++++++++++-- 1 file changed, 19 insertions(+), 2 deletions(-) diff --git a/wikipedia/scripts/fetch_enwiki_revisions.py b/wikipedia/scripts/fetch_enwiki_revisions.py index 3793c0b..6a3563f 100755 --- a/wikipedia/scripts/fetch_enwiki_revisions.py +++ b/wikipedia/scripts/fetch_enwiki_revisions.py @@ -80,10 +80,11 @@ def main(): 'sha1' : 'sha1', 'contentmodel' : 'contentmodel', 'tags' : 'tags', + 'flags' : 'flags', 'comment' : 'comment', 'content' : 'content' } - exclude_from_tsv = ['tags', 'comment', 'content'] + exclude_from_tsv = ['tags', 'comment', 'content', 'flags'] # load the list of articles with open(article_filename, 'r') as infile: @@ -101,7 +102,7 @@ def main(): tsv_fields = [e for e in tsv_fields if e not in exclude_from_tsv] # add special export fields - tsv_fields = tsv_fields + ['url', 'export_timestamp', 'export_commit'] + tsv_fields = tsv_fields + ['anon', 'minor', 'url', 'export_timestamp', 'export_commit'] export_info = { 'git_commit' : export_git_hash, 'timestamp' : export_time } @@ -127,6 +128,22 @@ def main(): if "sha1" not in rev: rev["sha1"] = "" + if "userhidden" in rev: + rev["user"] = "" + rev["userid"] = "" + + # recode anon so it's true or false instead of present/missing + if "anon" in rev: + rev["anon"] = True + else: + rev["anon"] = False + + # let's recode "minor" in the same way + if "minor" in rev: + rev["minor"] = True + else: + rev["minor"] = False + # add page title information rev['title'] = rev['page']['title'] rev['pageid'] = rev['page']['pageid'] -- 2.39.5 From 282588772e99e7df51523928c364247e9ad5a54b Mon Sep 17 00:00:00 2001 From: aaronshaw Date: Wed, 1 Apr 2020 16:52:22 -0500 Subject: [PATCH 10/16] pointing at updated data url, adding explicit NA handling to factor, cutting unnecessary call to ggplot2, and updated corresponding output from new data file. May not work while kibo urls are getting resolved --- .../output/top10_views_by_project_date.csv | 20 +++++++++---------- wikipedia_views/analysis/pageview_example.R | 9 +++++---- 2 files changed, 15 insertions(+), 14 deletions(-) diff --git a/wikipedia_views/analysis/output/top10_views_by_project_date.csv b/wikipedia_views/analysis/output/top10_views_by_project_date.csv index 796af10..ce7eb5e 100644 --- a/wikipedia_views/analysis/output/top10_views_by_project_date.csv +++ b/wikipedia_views/analysis/output/top10_views_by_project_date.csv @@ -1,11 +1,11 @@ "article","project","timestamp","views" -"2019–20_coronavirus_pandemic","en.wikipedia","2020032600",1148284 -"2020_coronavirus_pandemic_in_India","en.wikipedia","2020032600",513901 -"Coronavirus","en.wikipedia","2020032600",397959 -"2020_coronavirus_pandemic_in_the_United_States","en.wikipedia","2020032600",337676 -"2019–20_coronavirus_pandemic_by_country_and_territory","en.wikipedia","2020032600",298603 -"2020_coronavirus_pandemic_in_Italy","en.wikipedia","2020032600",297687 -"Coronavirus_disease_2019","en.wikipedia","2020032600",292272 -"2020_coronavirus_pandemic_in_Spain","en.wikipedia","2020032600",114732 -"2020_coronavirus_pandemic_in_the_United_Kingdom","en.wikipedia","2020032600",111856 -"Anthony_Fauci","en.wikipedia","2020032600",103205 +"2019–20_coronavirus_pandemic","en.wikipedia","2020033100",831879 +"2020_coronavirus_pandemic_in_India","en.wikipedia","2020033100",323123 +"2019–20_coronavirus_pandemic_by_country_and_territory","en.wikipedia","2020033100",315572 +"2020_coronavirus_pandemic_in_the_United_States","en.wikipedia","2020033100",290535 +"Coronavirus_disease_2019","en.wikipedia","2020033100",211391 +"2020_coronavirus_pandemic_in_Italy","en.wikipedia","2020033100",209908 +"Coronavirus","en.wikipedia","2020033100",188921 +"USNS_Comfort_(T-AH-20)","en.wikipedia","2020033100",150422 +"USNS_Comfort_(T-AH-20)","en.wikipedia","2020033100",150422 +"WrestleMania_36","en.wikipedia","2020033100",137637 diff --git a/wikipedia_views/analysis/pageview_example.R b/wikipedia_views/analysis/pageview_example.R index 8a7aba3..fb5359a 100644 --- a/wikipedia_views/analysis/pageview_example.R +++ b/wikipedia_views/analysis/pageview_example.R @@ -4,13 +4,12 @@ ### Minimal example analysis file using pageview data library(tidyverse) -library(ggplot2) library(scales) -### Import and cleanup data +### Import and cleanup one datafile from the observatory DataURL <- - url("https://github.com/CommunityDataScienceCollective/COVID-19_Digital_Observatory/raw/master/wikipedia_views/data/dailyviews2020032600.tsv") + url("https://covid19.communitydata.science/datasets/wikipedia/digobs_covid19-wikipedia-enwiki_dailyviews-20200401.tsv") views <- read.table(DataURL, sep="\t", header=TRUE, stringsAsFactors=FALSE) @@ -30,12 +29,14 @@ views <- ### (see https://www.tidyverse.org for more info) views <- views[,c("article", "project", "timestamp", "views")] -views$timestamp <- factor(views$timestamp) +views$timestamp <- fct_explicit_na(views$timestamp) + ### Sorts and groups at the same time views.by.proj.date <- arrange(group_by(views, project, timestamp), desc(views)) + ### Export just the top 10 by pageviews write.table(head(views.by.proj.date, 10), file="output/top10_views_by_project_date.csv", sep=",", -- 2.39.5 From 070d23f71854b43c22f11d3e26bceca8b2a1de3c Mon Sep 17 00:00:00 2001 From: Benjamin Mako Hill Date: Wed, 1 Apr 2020 17:16:34 -0500 Subject: [PATCH 11/16] changes in response to code review by nate - moved some common functions into files - other smaller changes --- wikipedia/scripts/digobs.py | 27 +++++++++++++++++++ wikipedia/scripts/fetch_enwiki_daily_views.py | 22 +++------------ wikipedia/scripts/fetch_enwiki_revisions.py | 24 +++++------------ 3 files changed, 37 insertions(+), 36 deletions(-) create mode 100644 wikipedia/scripts/digobs.py diff --git a/wikipedia/scripts/digobs.py b/wikipedia/scripts/digobs.py new file mode 100644 index 0000000..0bce250 --- /dev/null +++ b/wikipedia/scripts/digobs.py @@ -0,0 +1,27 @@ +#!/usr/bin/env python3 + +import sys +import subprocess +import logging + +def git_hash(short=False): + if short: + return subprocess.check_output(['git', 'rev-parse', '--short', 'HEAD']).decode().strip() + else: + subprocess.check_output(['git', 'rev-parse', 'HEAD']).decode().strip() + +def get_loglevel(arg_loglevel): + loglevel_mapping = { 'debug' : logging.DEBUG, + 'info' : logging.INFO, + 'warning' : logging.WARNING, + 'error' : logging.ERROR, + 'critical' : logging.CRITICAL } + + if arg_loglevel in loglevel_mapping: + loglevel = loglevel_mapping[arg_loglevel] + return loglevel + else: + print("Choose a valid log level: debug, info, warning, error, or critical", file=sys.stderr) + return logging.INFO + + diff --git a/wikipedia/scripts/fetch_enwiki_daily_views.py b/wikipedia/scripts/fetch_enwiki_daily_views.py index f766ed8..7015a3b 100755 --- a/wikipedia/scripts/fetch_enwiki_daily_views.py +++ b/wikipedia/scripts/fetch_enwiki_daily_views.py @@ -10,16 +10,15 @@ ############################################################################### import sys -import subprocess import requests import argparse import json import time import os.path -import argparse import datetime import logging from csv import DictWriter +import digobs #import feather #TBD def parse_args(): @@ -47,17 +46,7 @@ def main(): query_date = yesterday.strftime("%Y%m%d") #handle -L - loglevel_mapping = { 'debug' : logging.DEBUG, - 'info' : logging.INFO, - 'warning' : logging.WARNING, - 'error' : logging.ERROR, - 'critical' : logging.CRITICAL } - - if args.logging_level in loglevel_mapping: - loglevel = loglevel_mapping[args.logging_level] - else: - print("Choose a valid log level: debug, info, warning, error, or critical") - exit + loglevel = digobs.get_loglevel(args.logging_level) #handle -W if args.logging_destination: @@ -65,20 +54,18 @@ def main(): else: logging.basicConfig(level=loglevel) - export_git_hash = subprocess.check_output(['git', 'rev-parse', 'HEAD']).decode().strip() - export_git_short_hash = subprocess.check_output(['git', 'rev-parse', '--short', 'HEAD']).decode().strip() export_time = str(datetime.datetime.now()) export_date = datetime.datetime.today().strftime("%Y%m%d") logging.info(f"Starting run at {export_time}") - logging.info(f"Last commit: {export_git_hash}") + logging.info(f"Last commit: {digobs.git_hash()}") #1 Load up the list of article names j_outfilename = os.path.join(outputPath, f"digobs_covid19-wikipedia-enwiki_dailyviews-{export_date}.json") t_outfilename = os.path.join(outputPath, f"digobs_covid19-wikipedia-enwiki_dailyviews-{export_date}.tsv") with open(articleFile, 'r') as infile: - articleList = list(infile) + articleList = list(map(str.strip, infile)) success = 0 #for logging how many work/fail failure = 0 @@ -89,7 +76,6 @@ def main(): #2 Repeatedly call the API with that list of names for a in articleList: - a = a.strip("\"\n") #destringify url= f"https://wikimedia.org/api/rest_v1/metrics/pageviews/per-article/en.wikipedia/all-access/all-agents/{a}/daily/{query_date}00/{query_date}00" response = requests.get(url) diff --git a/wikipedia/scripts/fetch_enwiki_revisions.py b/wikipedia/scripts/fetch_enwiki_revisions.py index 6a3563f..2c0ef7a 100755 --- a/wikipedia/scripts/fetch_enwiki_revisions.py +++ b/wikipedia/scripts/fetch_enwiki_revisions.py @@ -13,12 +13,12 @@ import argparse import logging import os.path import json -import subprocess import datetime from requests import Request from csv import DictWriter from mw import api +import digobs def parse_args(): @@ -38,17 +38,7 @@ def main(): article_filename = args.article_file #handle -L - loglevel_mapping = { 'debug' : logging.DEBUG, - 'info' : logging.INFO, - 'warning' : logging.WARNING, - 'error' : logging.ERROR, - 'critical' : logging.CRITICAL } - - if args.logging_level in loglevel_mapping: - loglevel = loglevel_mapping[args.logging_level] - else: - print("Choose a valid log level: debug, info, warning, error, or critical") - exit + loglevel = digobs.get_loglevel(args.logging_level) #handle -W if args.logging_destination: @@ -56,13 +46,11 @@ def main(): else: logging.basicConfig(level=loglevel) - export_git_hash = subprocess.check_output(['git', 'rev-parse', 'HEAD']).decode().strip() - export_git_short_hash = subprocess.check_output(['git', 'rev-parse', '--short', 'HEAD']).decode().strip() export_time = str(datetime.datetime.now()) export_date = datetime.datetime.today().strftime("%Y%m%d") logging.info(f"Starting run at {export_time}") - logging.info(f"Last commit: {export_git_hash}") + logging.info(f"Last commit: {digobs.git_hash()}") json_output_filename = os.path.join(output_path, f"digobs_covid19-wikipedia-enwiki_revisions-{export_date}.json") tsv_output_filename = os.path.join(output_path, f"digobs_covid19-wikipedia-enwiki_revisions-{export_date}.tsv") @@ -88,7 +76,7 @@ def main(): # load the list of articles with open(article_filename, 'r') as infile: - article_list = [art.strip() for art in list(infile)] + article_list= list(map(str.strip, infile)) def get_revisions_for_page(title): return api_session.revisions.query(properties=rv_props.values(), @@ -104,7 +92,7 @@ def main(): # add special export fields tsv_fields = tsv_fields + ['anon', 'minor', 'url', 'export_timestamp', 'export_commit'] - export_info = { 'git_commit' : export_git_hash, + export_info = { 'git_commit' : digobs.git_hash(), 'timestamp' : export_time } with open(json_output_filename, 'w') as json_output, \ @@ -155,7 +143,7 @@ def main(): 'oldid' : rev['revid']}).prepare().url rev['export_timestamp'] = export_time - rev['export_commit'] = export_git_short_hash + rev['export_commit'] = digobs.git_hash(short=True) tsv_writer.writerow({k: rev[k] for k in tsv_fields}) -- 2.39.5 From b457cd726b8e4e15218eb3e2b50c07c6832e92a3 Mon Sep 17 00:00:00 2001 From: Benjamin Mako Hill Date: Wed, 1 Apr 2020 18:13:02 -0500 Subject: [PATCH 12/16] use the type= feature in argparse - integrated the type= feature in argparse in all three scripts - removed some redundant code from the third file --- wikipedia/scripts/fetch_enwiki_daily_views.py | 9 +++------ wikipedia/scripts/fetch_enwiki_revisions.py | 9 +++------ wikipedia/scripts/wikiproject_scraper.py | 19 +++---------------- 3 files changed, 9 insertions(+), 28 deletions(-) diff --git a/wikipedia/scripts/fetch_enwiki_daily_views.py b/wikipedia/scripts/fetch_enwiki_daily_views.py index 7015a3b..829343d 100755 --- a/wikipedia/scripts/fetch_enwiki_daily_views.py +++ b/wikipedia/scripts/fetch_enwiki_daily_views.py @@ -26,7 +26,7 @@ def parse_args(): parser.add_argument('-o', '--output_folder', help='Where to save output', default="wikipedia/data", type=str) parser.add_argument('-i', '--article_file', help='File listing article names', default="wikipedia/resources/enwp_wikiproject_covid19_articles.txt", type=str) parser.add_argument('-d', '--query_date', help='Date if not yesterday, in YYYYMMDD format.', type=str) - parser.add_argument('-L', '--logging_level', help='Logging level. Options are debug, info, warning, error, critical. Default: info.', default='info', type=str), + parser.add_argument('-L', '--logging_level', help='Logging level. Options are debug, info, warning, error, critical. Default: info.', default='info', type=digobs.get_loglevel), parser.add_argument('-W', '--logging_destination', help='Logging destination file. (default: standard error)', type=str), args = parser.parse_args() return(args) @@ -45,14 +45,11 @@ def main(): yesterday = datetime.datetime.today() - datetime.timedelta(days=1) query_date = yesterday.strftime("%Y%m%d") - #handle -L - loglevel = digobs.get_loglevel(args.logging_level) - #handle -W if args.logging_destination: - logging.basicConfig(filename=args.logging_destination, filemode='a', level=loglevel) + logging.basicConfig(filename=args.logging_destination, filemode='a', level=args.logging_level) else: - logging.basicConfig(level=loglevel) + logging.basicConfig(level=args.logging_level) export_time = str(datetime.datetime.now()) export_date = datetime.datetime.today().strftime("%Y%m%d") diff --git a/wikipedia/scripts/fetch_enwiki_revisions.py b/wikipedia/scripts/fetch_enwiki_revisions.py index 2c0ef7a..2d25e85 100755 --- a/wikipedia/scripts/fetch_enwiki_revisions.py +++ b/wikipedia/scripts/fetch_enwiki_revisions.py @@ -26,7 +26,7 @@ def parse_args(): parser = argparse.ArgumentParser(description='Call the views API to collect Wikipedia revision data.') parser.add_argument('-o', '--output_folder', help='Where to save output', default="wikipedia/data", type=str) parser.add_argument('-i', '--article_file', help='File listing article names', default="wikipedia/resources/enwp_wikiproject_covid19_articles.txt", type=str) - parser.add_argument('-L', '--logging_level', help='Logging level. Options are debug, info, warning, error, critical. Default: info.', default='info', type=str), + parser.add_argument('-L', '--logging_level', help='Logging level. Options are debug, info, warning, error, critical. Default: info.', default='info', type=digobs.get_loglevel), parser.add_argument('-W', '--logging_destination', help='Logging destination file. (default: standard error)', type=str), args = parser.parse_args() return(args) @@ -37,14 +37,11 @@ def main(): output_path = args.output_folder article_filename = args.article_file - #handle -L - loglevel = digobs.get_loglevel(args.logging_level) - #handle -W if args.logging_destination: - logging.basicConfig(filename=args.logging_destination, filemode='a', level=loglevel) + logging.basicConfig(filename=args.logging_destination, filemode='a', level=args.logging_level) else: - logging.basicConfig(level=loglevel) + logging.basicConfig(level=args.logging_level) export_time = str(datetime.datetime.now()) export_date = datetime.datetime.today().strftime("%Y%m%d") diff --git a/wikipedia/scripts/wikiproject_scraper.py b/wikipedia/scripts/wikiproject_scraper.py index 6e01051..528f0d7 100755 --- a/wikipedia/scripts/wikiproject_scraper.py +++ b/wikipedia/scripts/wikiproject_scraper.py @@ -30,7 +30,7 @@ def parse_args(): parser = argparse.ArgumentParser(description='Get a list of pages tracked by the COVID-19 Wikiproject.') parser.add_argument('-o', '--output_file', help='Where to save output', default="wikipedia/resources/enwp_wikiproject_covid19_articles.txt", type=str) - parser.add_argument('-L', '--logging_level', help='Logging level. Options are debug, info, warning, error, critical. Default: info.', default='info'), + parser.add_argument('-L', '--logging_level', help='Logging level. Options are debug, info, warning, error, critical. Default: info.', default='info', type=digobs.get_loglevel), parser.add_argument('-W', '--logging_destination', help='Logging destination file. (default: standard error)', type=str), args = parser.parse_args() @@ -41,24 +41,11 @@ def main(): args = parse_args() outputFile = args.output_file - #handle -L - loglevel_mapping = { 'debug' : logging.DEBUG, - 'info' : logging.INFO, - 'warning' : logging.WARNING, - 'error' : logging.ERROR, - 'critical' : logging.CRITICAL } - - if args.logging_level in loglevel_mapping: - loglevel = loglevel_mapping[args.logging_level] - else: - print("Choose a valid log level: debug, info, warning, error, or critical") - exit - #handle -W if args.logging_destination: - logging.basicConfig(filename=args.logging_destination, filemode='a', level=loglevel) + logging.basicConfig(filename=args.logging_destination, filemode='a', level=args.logging_level) else: - logging.basicConfig(level=loglevel) + logging.basicConfig(level=args.logging_level) export_git_hash = subprocess.check_output(['git', 'rev-parse', 'HEAD']).decode().strip() export_git_short_hash = subprocess.check_output(['git', 'rev-parse', '--short', 'HEAD']).decode().strip() -- 2.39.5 From 427eddd14163deea2f169a32d90cfcb7835f4ecc Mon Sep 17 00:00:00 2001 From: Benjamin Mako Hill Date: Wed, 1 Apr 2020 18:21:41 -0500 Subject: [PATCH 13/16] cleaned up unnecessary files --- .gitignore | 2 + wikipedia/logs/placeholder | 0 .../enwp_wikiproject_covid19_articles.txt | 1508 ----------------- 3 files changed, 2 insertions(+), 1508 deletions(-) delete mode 100644 wikipedia/logs/placeholder delete mode 100644 wikipedia/resources/enwp_wikiproject_covid19_articles.txt diff --git a/.gitignore b/.gitignore index cca401a..d137103 100644 --- a/.gitignore +++ b/.gitignore @@ -1 +1,3 @@ wikipedia/data/ +wikipedia/logs/ +wikipedia/resources/enwp_wikiproject_covid19_articles.txt diff --git a/wikipedia/logs/placeholder b/wikipedia/logs/placeholder deleted file mode 100644 index e69de29..0000000 diff --git a/wikipedia/resources/enwp_wikiproject_covid19_articles.txt b/wikipedia/resources/enwp_wikiproject_covid19_articles.txt deleted file mode 100644 index 1df2567..0000000 --- a/wikipedia/resources/enwp_wikiproject_covid19_articles.txt +++ /dev/null @@ -1,1508 +0,0 @@ -2019–20 coronavirus pandemic -Severe acute respiratory syndrome coronavirus 2 -Social distancing -Contact tracing -2019–20 coronavirus pandemic by country and territory -2020 coronavirus pandemic in Asia -Acute respiratory distress syndrome -Michael Sorkin -2019–20 coronavirus pandemic in mainland China -2020 coronavirus pandemic in Europe -2020 coronavirus pandemic in Italy -2020 coronavirus pandemic in Oceania -2020 coronavirus pandemic in South Korea -COVID-19 testing -Chloroquine -Grand Princess -Impact of the 2019–20 coronavirus pandemic on politics -Mike Longo -Tedros Adhanom -2020 coronavirus pandemic in Africa -Angiotensin-converting enzyme 2 -Liang Wudong -Risk factor -Angelo Rottoli -Patrick Devedjian -Case chronology of the 2019–20 coronavirus pandemic in March 2020 -List of deaths from the 2019–20 coronavirus pandemic -Timeline of the 2019–20 coronavirus pandemic from November 2019 to January 2020 -Timeline of the 2019–20 coronavirus pandemic in February 2020 -2020 coronavirus pandemic in Canada -2020 coronavirus pandemic in India -2019–20 coronavirus pandemic in Hubei -2020 coronavirus pandemic in Azerbaijan -2020 coronavirus pandemic in Bosnia and Herzegovina -2020 coronavirus pandemic in California -2020 coronavirus pandemic in Egypt -2020 coronavirus pandemic in France -2020 coronavirus pandemic in Greece -2020 coronavirus pandemic in Illinois -2020 coronavirus pandemic in Japan -2020 coronavirus pandemic in Malta -2020 coronavirus pandemic in Norway -2020 coronavirus pandemic in Portugal -2020 coronavirus pandemic in Russia -2020 coronavirus pandemic in Spain -2020 coronavirus pandemic in Switzerland -2020 coronavirus pandemic in Turkey -2020 coronavirus pandemic in the Czech Republic -2020 coronavirus pandemic in the Philippines -2020 coronavirus pandemic in the United Kingdom -Centers for Disease Control and Prevention -Coronavirus party -Extracorporeal membrane oxygenation -Financial impact of the 2019–20 coronavirus pandemic -Impact of the 2019–20 coronavirus pandemic on prisons -Impact of the 2019–20 coronavirus pandemic on the 2020 Summer Olympics -Impact of the 2019–20 coronavirus pandemic on the video game industry -NHS Nightingale Hospitals -Severe acute respiratory syndrome -U.S. state and local government response to the 2020 coronavirus pandemic -2019–20 coronavirus pandemic in Henan -2020 coronavirus lockdown in India -2020 coronavirus pandemic in Andorra -2020 coronavirus pandemic in Belarus -2020 coronavirus pandemic in Iceland -2020 coronavirus pandemic in Kosovo -2020 coronavirus pandemic in Lithuania -2020 coronavirus pandemic in Moldova -2020 coronavirus pandemic in Myanmar -2020 coronavirus pandemic in North Macedonia -2020 coronavirus pandemic in Slovenia -2020 coronavirus pandemic in Transnistria -2020 coronavirus pandemic in Ukraine -2020 coronavirus pandemic in the Falkland Islands -Case fatality rate -Coronavirus Aid, Relief, and Economic Security Act -Darvinson Rojas -Gaetano Manfredi -Jenny Polanco -Lopinavir/ritonavir -Mental health during the 2019–20 coronavirus pandemic -Spit hood -Zhong Nanshan -2020 coronavirus pandemic in Belize -2020 coronavirus pandemic in Mozambique -Chen Wei (medical scientist) -Imperial College COVID-19 Response Team -Panic buying -Curfews and lockdowns related to the 2019–20 coronavirus pandemic -Impact of the 2019–20 coronavirus pandemic on science and technology -List of incidents of xenophobia and racism related to the 2019–20 coronavirus pandemic -Joe Diffie -2020 Malaysia movement control order -2020 coronavirus pandemic in Guernsey -2020 coronavirus pandemic on cruise ships -Charles, Prince of Wales -Eurovision Song Contest 2020 -Larry Kudlow -Olga Kurylenko -Terrence McNally -Tom Hanks -2019–20 coronavirus pandemic cases/WHO situation reports -2019–20 coronavirus pandemic in Shanghai -2020 Luzon enhanced community quarantine -2020 coronavirus pandemic in Alberta -2020 coronavirus pandemic in Arkansas -2020 coronavirus pandemic in Brazil -2020 coronavirus pandemic in Chile -2020 coronavirus pandemic in Costa Rica -2020 coronavirus pandemic in Georgia (U.S. state) -2020 coronavirus pandemic in Indonesia -2020 coronavirus pandemic in Karnataka -2020 coronavirus pandemic in Louisiana -2020 coronavirus pandemic in Maryland -2020 coronavirus pandemic in Metro Manila -2020 coronavirus pandemic in Michigan -2020 coronavirus pandemic in Morocco -2020 coronavirus pandemic in New Jersey -2020 coronavirus pandemic in Nonthaburi Province -2020 coronavirus pandemic in Nova Scotia -2020 coronavirus pandemic in Ontario -2020 coronavirus pandemic in Pakistan -2020 coronavirus pandemic in Quebec -2020 coronavirus pandemic in Singapore -2020 coronavirus pandemic in South Carolina -2020 coronavirus pandemic in Tamil Nadu -2020 coronavirus pandemic in Uruguay -2020 coronavirus pandemic in Vietnam -2020 coronavirus pandemic in Washington, D.C. -2020 coronavirus pandemic in Wisconsin -2020 coronavirus pandemic in the United Arab Emirates -Anthony Fauci -Ben Carson -Carmen Deseda -Coronavirus Preparedness and Response Supplemental Appropriations Act, 2020 -Deborah Birx -Flybe -Impact of the 2019–20 coronavirus pandemic on aviation -Impact of the 2019–20 coronavirus pandemic on religion -Impact of the 2019–20 coronavirus pandemic on the food industry -Jesús Gayoso Rey -Kanika Kapoor -Lorena Borjas -Matthew Pottinger -Michael J. Ryan (doctor) -Neil Ferguson (epidemiologist) -Robert R. Redfield -SARS conspiracy theory -Steven Mnuchin -Suspension of the 2019–20 NBA season -Travel restrictions related to the 2019–20 coronavirus pandemic -White House Coronavirus Task Force -World Dream -Zhang Wenhong -2020 Tour Championship -2020 coronavirus pandemic in Alaska -2020 coronavirus pandemic in Arizona -2020 coronavirus pandemic in Aruba -2020 coronavirus pandemic in Bahrain -2020 coronavirus pandemic in Bolivia -2020 coronavirus pandemic in British Columbia -2020 coronavirus pandemic in Burkina Faso -2020 coronavirus pandemic in Canary Islands -2020 coronavirus pandemic in Chad -2020 coronavirus pandemic in Connecticut -2020 coronavirus pandemic in Cyprus -2020 coronavirus pandemic in Ecuador -2020 coronavirus pandemic in Eswatini -2020 coronavirus pandemic in Fiji -2020 coronavirus pandemic in Goa -2020 coronavirus pandemic in Hawaii -2020 coronavirus pandemic in Idaho -2020 coronavirus pandemic in Ivory Coast -2020 coronavirus pandemic in Jersey -2020 coronavirus pandemic 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Helmreich -- 2.39.5 From b26a2b5a861494079f7ecaf2c8d2862d1f01b589 Mon Sep 17 00:00:00 2001 From: Benjamin Mako Hill Date: Wed, 1 Apr 2020 18:22:36 -0500 Subject: [PATCH 14/16] fix bug in previous commit forgot to import digobs module in the scraper script --- wikipedia/scripts/wikiproject_scraper.py | 1 + 1 file changed, 1 insertion(+) diff --git a/wikipedia/scripts/wikiproject_scraper.py b/wikipedia/scripts/wikiproject_scraper.py index 528f0d7..b03b04c 100755 --- a/wikipedia/scripts/wikiproject_scraper.py +++ b/wikipedia/scripts/wikiproject_scraper.py @@ -25,6 +25,7 @@ import logging import re import math from bs4 import BeautifulSoup +import digobs def parse_args(): -- 2.39.5 From ff5521d44bf2d680e089b1fba7d92a134c98a7e6 Mon Sep 17 00:00:00 2001 From: Benjamin Mako Hill Date: Wed, 1 Apr 2020 18:23:50 -0500 Subject: [PATCH 15/16] ignore __pycache__ --- .gitignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.gitignore b/.gitignore index d137103..effc4ec 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,4 @@ wikipedia/data/ wikipedia/logs/ wikipedia/resources/enwp_wikiproject_covid19_articles.txt +__pycache__ -- 2.39.5 From 576d882c04b4cc784cd5a6296cb3c3e5aa596d39 Mon Sep 17 00:00:00 2001 From: aaronshaw Date: Wed, 1 Apr 2020 19:12:45 -0500 Subject: [PATCH 16/16] renaming example analysis directories --- .../output/top5_queries_per_term_per_date.csv | 0 .../output/top_queries_plot.png | Bin .../related_searches_example.R | 0 .../related_searches_tidyverse_example.R | 0 .../translations_example.R | 0 .../translations_example.py | 0 .../output/top10_views_by_project_date.csv | 11 ++++ wikipedia/example_analysis/pageview_example.R | 52 ++++++++++++++++++ 8 files changed, 63 insertions(+) rename keywords/{analysis => example_analysis}/output/top5_queries_per_term_per_date.csv (100%) rename keywords/{analysis => example_analysis}/output/top_queries_plot.png (100%) rename keywords/{analysis => example_analysis}/related_searches_example.R (100%) rename keywords/{analysis => example_analysis}/related_searches_tidyverse_example.R (100%) rename keywords/{analysis => example_analysis}/translations_example.R (100%) rename keywords/{analysis => example_analysis}/translations_example.py (100%) create mode 100644 wikipedia/example_analysis/output/top10_views_by_project_date.csv create mode 100644 wikipedia/example_analysis/pageview_example.R diff --git a/keywords/analysis/output/top5_queries_per_term_per_date.csv b/keywords/example_analysis/output/top5_queries_per_term_per_date.csv similarity index 100% rename from keywords/analysis/output/top5_queries_per_term_per_date.csv rename to keywords/example_analysis/output/top5_queries_per_term_per_date.csv diff --git a/keywords/analysis/output/top_queries_plot.png b/keywords/example_analysis/output/top_queries_plot.png similarity index 100% rename from keywords/analysis/output/top_queries_plot.png rename to keywords/example_analysis/output/top_queries_plot.png diff --git a/keywords/analysis/related_searches_example.R b/keywords/example_analysis/related_searches_example.R similarity index 100% rename from keywords/analysis/related_searches_example.R rename to keywords/example_analysis/related_searches_example.R diff --git a/keywords/analysis/related_searches_tidyverse_example.R b/keywords/example_analysis/related_searches_tidyverse_example.R similarity index 100% rename from keywords/analysis/related_searches_tidyverse_example.R rename to keywords/example_analysis/related_searches_tidyverse_example.R diff --git a/keywords/analysis/translations_example.R b/keywords/example_analysis/translations_example.R similarity index 100% rename from keywords/analysis/translations_example.R rename to keywords/example_analysis/translations_example.R diff --git a/keywords/analysis/translations_example.py b/keywords/example_analysis/translations_example.py similarity index 100% rename from keywords/analysis/translations_example.py rename to keywords/example_analysis/translations_example.py diff --git a/wikipedia/example_analysis/output/top10_views_by_project_date.csv b/wikipedia/example_analysis/output/top10_views_by_project_date.csv new file mode 100644 index 0000000..ce7eb5e --- /dev/null +++ b/wikipedia/example_analysis/output/top10_views_by_project_date.csv @@ -0,0 +1,11 @@ +"article","project","timestamp","views" +"2019–20_coronavirus_pandemic","en.wikipedia","2020033100",831879 +"2020_coronavirus_pandemic_in_India","en.wikipedia","2020033100",323123 +"2019–20_coronavirus_pandemic_by_country_and_territory","en.wikipedia","2020033100",315572 +"2020_coronavirus_pandemic_in_the_United_States","en.wikipedia","2020033100",290535 +"Coronavirus_disease_2019","en.wikipedia","2020033100",211391 +"2020_coronavirus_pandemic_in_Italy","en.wikipedia","2020033100",209908 +"Coronavirus","en.wikipedia","2020033100",188921 +"USNS_Comfort_(T-AH-20)","en.wikipedia","2020033100",150422 +"USNS_Comfort_(T-AH-20)","en.wikipedia","2020033100",150422 +"WrestleMania_36","en.wikipedia","2020033100",137637 diff --git a/wikipedia/example_analysis/pageview_example.R b/wikipedia/example_analysis/pageview_example.R new file mode 100644 index 0000000..fb5359a --- /dev/null +++ b/wikipedia/example_analysis/pageview_example.R @@ -0,0 +1,52 @@ +### COVID-19 Digital Observatory +### 2020-03-28 +### +### Minimal example analysis file using pageview data + +library(tidyverse) +library(scales) + +### Import and cleanup one datafile from the observatory + +DataURL <- + url("https://covid19.communitydata.science/datasets/wikipedia/digobs_covid19-wikipedia-enwiki_dailyviews-20200401.tsv") + +views <- + read.table(DataURL, sep="\t", header=TRUE, stringsAsFactors=FALSE) + +### Alternatively, uncomment and run if working locally with full git +### tree +### +### Identify data source directory and file +## DataDir <- ("../data/") +## DataFile <- ("dailyviews2020032600.tsv") + +## related.searches.top <- read.table(paste(DataDir,DataFile, sep=""), +## sep="\t", header=TRUE, +## stringsAsFactors=FALSE) + +### Cleanup and do the grouping with functions from the Tidyverse +### (see https://www.tidyverse.org for more info) + +views <- views[,c("article", "project", "timestamp", "views")] +views$timestamp <- fct_explicit_na(views$timestamp) + + +### Sorts and groups at the same time +views.by.proj.date <- arrange(group_by(views, project, timestamp), + desc(views)) + + +### Export just the top 10 by pageviews +write.table(head(views.by.proj.date, 10), + file="output/top10_views_by_project_date.csv", sep=",", + row.names=FALSE) + +### A simple visualization +p <- ggplot(data=views.by.proj.date, aes(views)) + +## Density plot with log-transformed axis +p + geom_density() + scale_x_log10(labels=comma) + + + -- 2.39.5