SHELL=bash Ns=[500,1000,10000,25000] ms=[50, 100, 250, 500] seeds=[$(shell seq -s, 1 250)] all:remembr.RDS srun=srun -A comdata -p compute-bigmem --time=10:00:00 --mem 4G -c 1 example_1_jobs: 01_two_covariates.R simulation_base.R grid_sweep.py grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"]}' --outfile example_1_jobs example_1.feather: example_1_jobs rm -f example_1.feather sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_1_jobs sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs example_2_jobs: example_2.R grid_sweep.py --command "Rscript example_2.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"]}' --outfile example_2_jobs example_2.feather: example_2_jobs rm -f example_2.feather sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_jobs # sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_jobs example_2_B_jobs: example_2_B.R grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs example_2_B.feather: example_2_B_jobs rm -f example_2_B.feather sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs example_3_jobs: example_3.R grid_sweep.py --command "Rscript example_3.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"]}' --outfile example_3_jobs example_3.feather: example_3_jobs rm -f example_3.feather sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_3_jobs remembr.RDS:example_2_B.feather example_1.feather example_2.feather example_3.feather ${srun} Rscript plot_example.R --infile example_1.feather --name "plot.df.example.1" ${srun} Rscript plot_example.R --infile example_2.feather --name "plot.df.example.2" ${srun} Rscript plot_example.R --infile example_2_B.feather --name "plot.df.example.2B" ${srun} Rscript plot_example.R --infile example_3.feather --name "plot.df.example.3" # sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_jobs # example_2_B_mecor_jobs: # grid_sweep.py --command "Rscript example_2_B_mecor.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B_mecor.feather"]}' --outfile example_2_B_mecor_jobs # example_2_B_mecor.feather:example_2_B_mecor.R example_2_B_mecor_jobs # rm -f example_2_B_mecor.feather # sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_mecor_jobs # sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_mecor_jobs