SHELL=bash Ns=[1000, 2000, 4000] ms=[200, 400, 800] seeds=[$(shell seq -s, 1 250)] explained_variances=[0.1] all:remembr.RDS remember_irr.RDS srun=srun -A comdata -p compute-bigmem --time=6:00:00 --mem 4G -c 1 joblists:example_1_jobs example_2_jobs example_3_jobs # test_true_z_jobs: test_true_z.R simulation_base.R # grid_sweep.py --command "Rscript test_true_z.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["test_true_z.feather"], "y_explained_variancevari":${explained_variances}, "Bzx":${Bzx}}' --outfile test_true_z_jobsb # test_true_z.feather: test_true_z_jobs # rm -f test_true_z.feather # sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 test_true_z_jobs # sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 test_true_z_jobs example_1_jobs: 01_two_covariates.R simulation_base.R grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"], "y_explained_variance":${explained_variances}, "Bzx":[0.1]}' --outfile example_1_jobs example_1.feather: example_1_jobs rm -f example_1.feather sbatch --wait --verbose --array=1-$(shell cat example_1_jobs | wc -l) run_simulation.sbatch 0 example_1_jobs # sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs example_2_jobs: 02_indep_differential.R simulation_base.R grid_sweep.py --command "Rscript 02_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"],"y_explained_variance":${explained_variances}, "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y*z*x"]}' --outfile example_2_jobs example_2.feather: example_2_jobs rm -f example_2.feather sbatch --wait --verbose --array=1-$(shell cat example_2_jobs | wc -l) run_simulation.sbatch 0 example_2_jobs # sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_jobs # example_2_B_jobs: example_2_B.R # grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs # example_2_B.feather: example_2_B_jobs # rm -f example_2_B.feather # sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs example_3_jobs: 03_depvar.R simulation_base.R grid_sweep.py --command "Rscript 03_depvar.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"], "y_explained_variance":${explained_variances}}' --outfile example_3_jobs example_3.feather: example_3_jobs rm -f example_3.feather sbatch --wait --verbose --array=1-$(shell cat example_3_jobs | wc -l) run_simulation.sbatch 0 example_3_jobs example_4_jobs: 04_depvar_differential.R simulation_base.R grid_sweep.py --command "Rscript 04_depvar_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_4.feather"], "y_explained_variance":${explained_variances}}' --outfile example_4_jobs example_4.feather: example_4_jobs rm -f example_4.feather sbatch --wait --verbose --array=1-$(shell cat example_4_jobs | wc -l) run_simulation.sbatch 0 example_4_jobs remembr.RDS:example_1.feather example_2.feather example_3.feather example_4.feather plot_example.R plot_dv_example.R rm -f remembr.RDS ${srun} Rscript plot_example.R --infile example_1.feather --name "plot.df.example.1" ${srun} Rscript plot_example.R --infile example_2.feather --name "plot.df.example.2" ${srun} Rscript plot_dv_example.R --infile example_3.feather --name "plot.df.example.3" ${srun} Rscript plot_dv_example.R --infile example_4.feather --name "plot.df.example.4" irr_Ns = ${Ns} irr_ms = ${ms} irr_seeds=${seeds} irr_explained_variances=${explained_variances} example_5_jobs: 05_irr_indep.R irr_simulation_base.R grid_sweep.py --command "Rscript 05_irr_indep.R" --arg_dict '{"N":${irr_Ns},"m":${irr_ms}, "seed":${irr_seeds}, "outfile":["example_5.feather"], "y_explained_variance":${irr_explained_variances}}' --outfile example_5_jobs example_5.feather:example_5_jobs rm -f example_5.feather sbatch --wait --verbose --array=1-$(shell cat example_5_jobs | wc -l) run_simulation.sbatch 0 example_5_jobs example_6_jobs: 06_irr_dv.R irr_dv_simulation_base.R grid_sweep.py --command "Rscript 06_irr_dv.R" --arg_dict '{"N":${irr_Ns},"m":${irr_ms}, "seed":${irr_seeds}, "outfile":["example_6.feather"], "y_explained_variance":${irr_explained_variances}}' --outfile example_6_jobs example_6.feather:example_6_jobs rm -f example_6.feather sbatch --wait --verbose --array=1-$(shell cat example_6_jobs | wc -l) run_simulation.sbatch 0 example_6_jobs remember_irr.RDS: example_5.feather example_6.feather plot_irr_example.R plot_irr_dv_example.R rm -f remember_irr.RDS ${srun} Rscript plot_irr_example.R --infile example_5.feather --name "plot.df.example.5" ${srun} Rscript plot_irr_dv_example.R --infile example_6.feather --name "plot.df.example.6" clean: rm *.feather rm -f remembr.RDS rm -f example_*_jobs # sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_jobs # example_2_B_mecor_jobs: # grid_sweep.py --command "Rscript example_2_B_mecor.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B_mecor.feather"]}' --outfile example_2_B_mecor_jobs # example_2_B_mecor.feather:example_2_B_mecor.R example_2_B_mecor_jobs # rm -f example_2_B_mecor.feather # sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_mecor_jobs # sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_mecor_jobs