X-Git-Url: https://code.communitydata.science/ml_measurement_error_public.git/blobdiff_plain/e41d11afb9a80180feff844666e3ee463d20a7cd..cb1e895ff1e3359db17d918caa67b758c0d7e901:/simulations/Makefile

diff --git a/simulations/Makefile b/simulations/Makefile
index 264b408..6f6ff5b 100644
--- a/simulations/Makefile
+++ b/simulations/Makefile
@@ -1,51 +1,53 @@
 
 SHELL=bash
 
-Ns=[1000,10000,25000]
+Ns=[500,1000,10000]
 ms=[50, 100, 250, 500]
 seeds=[$(shell seq -s, 1 250)]
 all:remembr.RDS
 
 srun=srun -A comdata -p compute-bigmem --time=10:00:00 --mem 4G -c 1
 
-example_1_jobs: example_1.R
-	grid_sweep.py --command "Rscript example_1.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"]}' --outfile example_1_jobs
+example_1_jobs: 01_two_covariates.R
+	grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"]}' --outfile example_1_jobs
 
 example_1.feather: example_1_jobs
 	rm -f example_1.feather
 	sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_1_jobs
-#	sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs
+	sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs
 
 example_2_jobs: example_2.R
-	grid_sweep.py --command "Rscript example_2.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"]}' --outfile example_2_jobs
+	grid_sweep.py --command "Rscript 02_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"]}' --outfile example_2_jobs
 
 example_2.feather: example_2_jobs
 	rm -f example_2.feather
 	sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_jobs
-#	sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_jobs
+	sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_jobs
 
-example_2_B_jobs: example_2_B.R
-	grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs
+# example_2_B_jobs: example_2_B.R
+# 	grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs
 
-example_2_B.feather: example_2_B_jobs
-	rm -f example_2_B.feather
-	sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs
+# example_2_B.feather: example_2_B_jobs
+# 	rm -f example_2_B.feather
+# 	sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs
 
-example_3_jobs: example_3.R
-	grid_sweep.py --command "Rscript example_3.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"]}' --outfile example_3_jobs
+example_3_jobs: 03_depvar_differential.R
+	grid_sweep.py --command "Rscript 03_depvar_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"]}' --outfile example_3_jobs
 
 example_3.feather: example_3_jobs
 	rm -f example_3.feather
 	sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_3_jobs
-
+	sbatch --wait --verbose --array=3001-6000 run_simulation.sbatch 0 example_3_jobs
 
 remembr.RDS:example_2_B.feather example_1.feather example_2.feather example_3.feather
 	${srun} Rscript plot_example.R --infile example_1.feather --name "plot.df.example.1"
 	${srun} Rscript plot_example.R --infile example_2.feather --name "plot.df.example.2"
-	${srun} Rscript plot_example.R --infile example_2_B.feather --name "plot.df.example.2B"
-	${srun} Rscript plot_example.R --infile example_3.feather --name "plot.df.example.3"
-
+	${srun} Rscript plot_dv_example.R --infile example_3.feather --name "plot.df.example.3"
+#	${srun} Rscript plot_example.R --infile example_2_B.feather --name "plot.df.example.2B"
 
+clean:
+	rm *.feather
+	rm remembr.RDS
 
 #	sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_jobs