X-Git-Url: https://code.communitydata.science/ml_measurement_error_public.git/blobdiff_plain/e41d11afb9a80180feff844666e3ee463d20a7cd..refs/heads/irr:/simulations/Makefile diff --git a/simulations/Makefile b/simulations/Makefile index 264b408..dec7889 100644 --- a/simulations/Makefile +++ b/simulations/Makefile @@ -1,52 +1,68 @@ SHELL=bash -Ns=[1000,10000,25000] -ms=[50, 100, 250, 500] +Ns=[1000,3600,14400] +ms=[75,150,300] seeds=[$(shell seq -s, 1 250)] +explained_variances=[0.1] + all:remembr.RDS -srun=srun -A comdata -p compute-bigmem --time=10:00:00 --mem 4G -c 1 +srun=srun -A comdata -p compute-bigmem --time=6:00:00 --mem 4G -c 1 + + +joblists:example_1_jobs example_2_jobs example_3_jobs + +# test_true_z_jobs: test_true_z.R simulation_base.R +# grid_sweep.py --command "Rscript test_true_z.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["test_true_z.feather"], "y_explained_variancevari":${explained_variances}, "Bzx":${Bzx}}' --outfile test_true_z_jobsb -example_1_jobs: example_1.R - grid_sweep.py --command "Rscript example_1.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"]}' --outfile example_1_jobs +# test_true_z.feather: test_true_z_jobs +# rm -f test_true_z.feather +# sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 test_true_z_jobs +# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 test_true_z_jobs -example_1.feather: example_1_jobs + +example_1_jobs: 01_two_covariates.R simulation_base.R + grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"], "y_explained_variance":${explained_variances}, "Bzx":[0.1]}' --outfile example_1_jobs + +example_1.feather: example_1_jobs rm -f example_1.feather - sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_1_jobs + sbatch --wait --verbose --array=1-$(shell cat example_1_jobs | wc -l) run_simulation.sbatch 0 example_1_jobs # sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs -example_2_jobs: example_2.R - grid_sweep.py --command "Rscript example_2.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"]}' --outfile example_2_jobs +example_2_jobs: 02_indep_differential.R simulation_base.R + grid_sweep.py --command "Rscript 02_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"],"y_explained_variance":${explained_variances}, "accuracy_imbalance_difference":[0.3], "Bzy":[0.3]}' --outfile example_2_jobs -example_2.feather: example_2_jobs +example_2.feather: example_2_jobs rm -f example_2.feather - sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_jobs + sbatch --wait --verbose --array=1-$(shell cat example_2_jobs | wc -l) run_simulation.sbatch 0 example_2_jobs # sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_jobs -example_2_B_jobs: example_2_B.R - grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs +# example_2_B_jobs: example_2_B.R +# grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs -example_2_B.feather: example_2_B_jobs - rm -f example_2_B.feather - sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs +# example_2_B.feather: example_2_B_jobs +# rm -f example_2_B.feather +# sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs -example_3_jobs: example_3.R - grid_sweep.py --command "Rscript example_3.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"]}' --outfile example_3_jobs +example_3_jobs: 03_depvar_differential.R simulation_base.R + grid_sweep.py --command "Rscript 03_depvar_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"], "y_explained_variance":${explained_variances}}' --outfile example_3_jobs example_3.feather: example_3_jobs - rm -f example_3.feather - sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_3_jobs + rm -f example_3.feather + sbatch --wait --verbose --array=1-$(shell cat example_3_jobs | wc -l) run_simulation.sbatch 0 example_3_jobs -remembr.RDS:example_2_B.feather example_1.feather example_2.feather example_3.feather +remembr.RDS:example_1.feather example_2.feather example_3.feather plot_example.R plot_dv_example.R + rm -f remembr.RDS ${srun} Rscript plot_example.R --infile example_1.feather --name "plot.df.example.1" ${srun} Rscript plot_example.R --infile example_2.feather --name "plot.df.example.2" - ${srun} Rscript plot_example.R --infile example_2_B.feather --name "plot.df.example.2B" - ${srun} Rscript plot_example.R --infile example_3.feather --name "plot.df.example.3" - - + ${srun} Rscript plot_dv_example.R --infile example_3.feather --name "plot.df.example.3" +clean: + rm *.feather + rm -f remembr.RDS + rm -f example_*_jobs # sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_jobs # example_2_B_mecor_jobs: