From: chainsawriot <chainsawtiney@gmail.com>
Date: Tue, 26 Jul 2022 13:21:52 +0000 (+0200)
Subject: Add simulation code of IRR
X-Git-Url: https://code.communitydata.science/ml_measurement_error_public.git/commitdiff_plain/a02bcbb1d4c7af0ff8e0dbba63ea31935ffb4a45?ds=inline;hp=-c

Add simulation code of IRR
---

a02bcbb1d4c7af0ff8e0dbba63ea31935ffb4a45
diff --git a/irr/irr.R b/irr/irr.R
new file mode 100644
index 0000000..5af632e
--- /dev/null
+++ b/irr/irr.R
@@ -0,0 +1,43 @@
+require(tibble)
+require(purrr)
+
+.emulate_coding <- function(ground_truth, Q = 1) {
+    if (runif(1) > Q) {
+        return(sample(c(1,0), 1))
+    } else {
+        return(ground_truth)
+    }
+}
+
+##irr::kripp.alpha(matrix(c(obs_x, obs_x2), nrow = 2, byrow = TRUE), method = "nominal")
+### Which is very close to
+## cor(obs_x, obs_x2)
+
+.sim <- function(N = 100, P = 0.5, Q = 0.8) {
+    real_x <- rbinom(N, 1, P)
+    obs_x <- purrr::map_dbl(real_x, .emulate_coding, Q = Q)
+### then learn w from obs_x and k
+    obs_x2 <- purrr::map_dbl(real_x, .emulate_coding, Q = Q)
+    ra <- sum(diag(table(obs_x, obs_x2))) / N ## raw agreement
+    rr <- cor(obs_x, obs_x2)
+    irr <- irr::kripp.alpha(matrix(c(obs_x, obs_x2), nrow = 2, byrow = TRUE), method = "nominal")$value
+    return(data.frame(N, P, Q, ra, rr, irr))
+}
+
+N <- c(50, 100, 300)
+P <- c(0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9)
+Q <- c(0.5, 0.6, 0.7, 0.8, 0.9, 1)
+conditions <- tibble::tibble(expand.grid(N, P, Q))
+colnames(conditions) <- c("N", "P", "Q")
+res <- list()
+
+for (i in seq_len(nrow(conditions))) {
+    print(i)
+    res[[i]] <- purrr::map_dfr(rep(NA, 100), ~ .sim(conditions$N[i], conditions$P[i], conditions$Q[i]))
+}
+
+conditions$res <- res
+
+require(dplyr)
+
+conditions %>% mutate(mra = purrr::map_dbl(res, ~mean(.$ra, na.rm = TRUE)), mrr = purrr::map_dbl(res, ~mean(.$rr, na.rm = TRUE)), mirr = purrr::map_dbl(res, ~mean(.$irr, na.rm = TRUE))) %>% lm(mirr~0+P+poly(Q, 2), data =.) %>% summary