make pass keyword arg to dataframe.drop

[cdsc_reddit.git] / similarities / Makefile

diff --git a/similarities/Makefile b/similarities/Makefile
index 0ec0342f56872ce2e92bc980aecf0c41f1f96acf..3d508d94955352c77917e7c9413db037fa427092 100644 (file)
--- a/similarities/Makefile
+++ b/similarities/Makefile
@@ -1,25 +1,28 @@
-all: /gscratch/comdata/output/reddit_similarity/subreddit_comment_authors_10000.parquet /gscratch/comdata/output/reddit_similarity/subreddit_comment_authors_10000.parquet /gscratch/comdata/output/reddit_similarity/subreddit_author_tf_similarities_10000.parquet /gscratch/comdata/output/reddit_similarity/subreddit_comment_authors_10000.parquet /gscratch/comdata/output/reddit_similarity/comment_terms.parquet
+srun=srun -p compute-bigmem -A comdata --mem-per-cpu=9g --time=200:00:00 -c 40
+srun_huge=srun -p compute-hugemem -A comdata --mem=724g --time=200:00:00 -c 40
 
-# all: /gscratch/comdata/output/reddit_similarity/subreddit_comment_terms_25000.parquet /gscratch/comdata/output/reddit_similarity/subreddit_comment_authors_25000.parquet /gscratch/comdata/output/reddit_similarity/subreddit_comment_authors_10000.parquet /gscratch/comdata/output/reddit_similarity/comment_terms_10000_weekly.parquet
+similarity_data=../../data/reddit_similarity
+tfidf_data=${similarity_data}/tfidf
+lsi_components=[10,50,100,200,300,400,500,600,700,850]
 
+lsi_similarities: ${similarity_data}/subreddit_comment_authors-tf_10k_LSI
 
-# /gscratch/comdata/output/reddit_similarity/subreddit_comment_authors_25000.parquet: cosine_similarities.py /gscratch/comdata/output/reddit_similarity/tfidf/comment_authors.parquet
-#      start_spark_and_run.sh 1 cosine_similarities.py author --outfile=/gscratch/comdata/output/reddit_similarity/subreddit_comment_authors_25000.feather
+all: ${similarity_data}/subreddit_comment_authors-tf_10k.feather
 
-/gscratch/comdata/output/reddit_similarity/tfidf/comment_terms.parquet: tfidf.py similarities_helper.py /gscratch/comdata/output/reddit_ngrams/comment_terms.parquet /gscratch/comdata/output/reddit_similarity/subreddits_by_num_comments.csv
-       start_spark_and_run.sh 1 tfidf.py terms --topN=10000
+${similarity_data}/subreddit_comment_authors-tf_10k_LSI: ${tfidf_data}/comment_authors_100k.parquet similarities_helper.py ${similarity_data}/subreddits_by_num_comments_nonsfw.csv
+        ${srun_huge} /bin/bash -c "source ~/.bashrc; python3 lsi_similarities.py author-tf --outfile=${similarity_data}/subreddit_comment_authors-tf_10k_LSI --topN=10000 --n_components=${lsi_components} --min_df=10 --inpath=$<"
 
-/gscratch/comdata/output/reddit_similarity/tfidf/comment_authors.parquet: tfidf.py similarities_helper.py /gscratch/comdata/output/reddit_ngrams/comment_authors.parquet /gscratch/comdata/output/reddit_similarity/subreddits_by_num_comments.csv
-       start_spark_and_run.sh 1 tfidf.py authors --topN=10000
+${similarity_data}/subreddits_by_num_comments_nonsfw.csv: ../../data/reddit_submissions_by_subreddit.parquet ../../data/reddit_comments_by_subreddit.parquet
+       ../start_spark_and_run.sh 3 top_subreddits_by_comments.py
 
-/gscratch/comdata/output/reddit_similarity/comment_authors_10000.parquet: cosine_similarities.py similarities_helper.py /gscratch/comdata/output/reddit_similarity/tfidf/comment_authors.parquet /gscratch/comdata/output/reddit_similarity/tfidf/comment_authors.parquet 
-       start_spark_and_run.sh 1 cosine_similarities.py author --outfile=/gscratch/comdata/output/reddit_similarity/comment_authors_10000.feather
+${tfidf_data}/comment_authors_100k.parquet: ../../data/reddit_ngrams/comment_authors_sorted.parquet ${similarity_data}/subreddits_by_num_comments_nonsfw.csv
+       ../start_spark_and_run.sh 3 tfidf.py authors --topN=100000 --inpath=$< --outpath=${tfidf_data}/comment_authors_100k.parquet
 
-/gscratch/comdata/output/reddit_similarity/comment_terms.parquet: cosine_similarities.py similarities_helper.py /gscratch/comdata/output/reddit_similarity/tfidf/comment_terms.parquet
-       start_spark_and_run.sh 1 cosine_similarities.py term --outfile=/gscratch/comdata/output/reddit_similarity/comment_terms_10000.feather
+../../data/reddit_ngrams/comment_authors_sorted.parquet:
+       $(MAKE) -C ../ngrams
 
-# /gscratch/comdata/output/reddit_similarity/comment_terms_10000_weekly.parquet: cosine_similarities.py /gscratch/comdata/output/reddit_similarity/tfidf_weekly/comment_authors.parquet
-#      start_spark_and_run.sh 1 weekly_cosine_similarities.py term --outfile=/gscratch/comdata/output/reddit_similarity/subreddit_comment_terms_10000_weely.parquet
+../../data/reddit_submissions_by_subreddit.parquet:
+       $(MAKE) -C ../datasets
 
-/gscratch/comdata/output/reddit_similarity/subreddit_author_tf_similarities_10000.parquet: cosine_similarities.py similarities_helper.py /gscratch/comdata/output/reddit_similarity/tfidf/comment_authors.parquet /gscratch/comdata/output/reddit_similarity/tfidf/comment_authors.parquet
-       start_spark_and_run.sh 1 cosine_similarities.py author-tf --outfile=/gscratch/comdata/output/reddit_similarity/subreddit_author_tf_similarities_10000.parquet
+../../data/reddit_comments_by_subreddit.parquet:
+       $(MAKE) -C ../datasets