changes for archiving.

[cdsc_reddit.git] / start_spark_and_run.sh

diff --git a/start_spark_and_run.sh b/start_spark_and_run.sh
new file mode 100755 (executable)
index 0000000..e1dcf6e
--- /dev/null
+++ b/start_spark_and_run.sh
@@ -0,0 +1,21 @@
+
+#!/usr/bin/env bash
+
+# Script to start a spark cluster and run a script on klone
+source $SPARK_CONF_DIR/spark-env.sh
+echo "#!/usr/bin/bash" > job_script.sh
+echo "source ~/.bashrc" >> job_script.sh
+echo "export PYSPARK_PYTHON=python3" >> job.script.sh
+echo "export JAVA_HOME=/gscratch/comdata/local/open-jdk" >> job.script.sh
+echo "export SPARK_CONF_DIR=/gscratch/comdata/local/spark_config" >> job.script.sh
+echo "echo \$(hostname)" >> job_script.sh
+echo "source $SPARK_CONF_DIR/spark-env.sh" >> job.script.sh
+echo "start_spark_cluster.sh" >> job_script.sh
+echo "spark-submit --verbose --master spark://\$(hostname):$SPARK_MASTER_PORT $2 ${@:3}" >> job_script.sh
+echo "stop-all.sh" >> job_script.sh
+#echo "singularity instance stop --all" >> job_script.sh
+chmod +x job_script.sh
+
+let "cpus = $1 * 40" 
+salloc -p compute-bigmem -A comdata --nodes=$1 --time=48:00:00 -c 40 --mem=362G --exclusive srun -n1 job_script.sh
+