commit changes from smap project.

[cdsc_reddit.git] / density / overlap_density.py

diff --git a/density/overlap_density.py b/density/overlap_density.py
index a1e9f6dcc77875fc9a910ce7a45023f4b935d3a3..ef0eb26953f4c83775972be61afb36cffca814c7 100644 (file)
--- a/density/overlap_density.py
+++ b/density/overlap_density.py
@@ -1,11 +1,12 @@
 import pandas as pd
 from pandas.core.groupby import DataFrameGroupBy as GroupBy
+from pathlib import Path
 import fire
 import numpy as np
 import sys
-sys.path.append("..")
-sys.path.append("../similarities")
-from similarities.similarities_helper import read_tfidf_matrix, reindex_tfidf, reindex_tfidf_time_interval
+# sys.path.append("..")
+# sys.path.append("../similarities")
+# from similarities.similarities_helper import pull_tfidf
 
 # this is the mean of the ratio of the overlap to the focal size.
 # mean shared membership per focal community member
@@ -13,10 +14,12 @@ from similarities.similarities_helper import read_tfidf_matrix, reindex_tfidf, r
 
 def overlap_density(inpath, outpath, agg = pd.DataFrame.sum):
     df = pd.read_feather(inpath)
-    df = df.drop('subreddit',1)
+    df = df.drop('_subreddit',1)
     np.fill_diagonal(df.values,0)
     df = agg(df, 0).reset_index()
     df = df.rename({0:'overlap_density'},axis='columns')
+    outpath = Path(outpath)
+    outpath.parent.mkdir(parents=True, exist_ok = True)
     df.to_feather(outpath)
     return df
 
@@ -25,6 +28,8 @@ def overlap_density_weekly(inpath, outpath, agg = GroupBy.sum):
     # exclude the diagonal
     df = df.loc[df.subreddit != df.variable]
     res = agg(df.groupby(['subreddit','week'])).reset_index()
+    outpath = Path(outpath)
+    outpath.parent.mkdir(parents=True, exist_ok = True)
     res.to_feather(outpath)
     return res
 
@@ -72,5 +77,5 @@ if __name__ == "__main__":
     fire.Fire({'authors':author_overlap_density,
                'terms':term_overlap_density,
                'author_weekly':author_overlap_density_weekly,
-               'term_weekly':term_overlap_density_weekly,
-               'wang_overlaps':wang_overlap_density})
+               'term_weekly':term_overlap_density_weekly})
+