Bugfixes in scripts.

diff --git a/comments_2_parquet.sh b/comments_2_parquet.sh
index 802cc70b7a880220725ec7a443e8345b1ae27e74..096fa061bf015a83e3c5218e3f7ca01e01b7912b 100755 (executable)
--- a/comments_2_parquet.sh
+++ b/comments_2_parquet.sh
@@ -1,9 +1,9 @@
 #!/usr/bin/env bash
 
 #!/usr/bin/env bash
 

-echo "!#/usr/bin/bash" > job_script.sh
+echo "#!/usr/bin/bash" > job_script.sh

 echo "source $(pwd)/../bin/activate" >> job_script.sh
 echo "python3 $(pwd)/comments_2_parquet_part1.py" >> job_script.sh
 
 echo "source $(pwd)/../bin/activate" >> job_script.sh
 echo "python3 $(pwd)/comments_2_parquet_part1.py" >> job_script.sh
 

-srun -p comdata -A comdata --nodes=1 --mem=120G --time=48:00:00 job_script.sh
+srun -p comdata -A comdata --nodes=1 --mem=120G --time=48:00:00 --pty job_script.sh

 
 start_spark_and_run.sh 1 $(pwd)/comments_2_parquet_part2.py
 
 start_spark_and_run.sh 1 $(pwd)/comments_2_parquet_part2.py

diff --git a/helper.py b/helper.py
index 4dc6210bef50e8142f2c56fbc788700cc761a082..b401cada8a3ec394c5c0f6985f7954d2d39af1b7 100644 (file)
--- a/helper.py
+++ b/helper.py
@@ -17,16 +17,8 @@ def find_dumps(dumpdir, base_pattern):
     ext_priority = ['.zst','.xz','.bz2']
 
     for base, exts in dumpext.items():
     ext_priority = ['.zst','.xz','.bz2']
 
     for base, exts in dumpext.items():

-        found = False
-        if len(exts) == 1:
-            yield base + exts[0]
-            found = True
-        else:
-            for ext in ext_priority:
-                if ext in exts:
-                    yield base + ext
-                    found = True
-        assert(found == True)
+        ext = [ext for ext in ext_priority if ext in exts][0]
+        yield base + ext

 
 def open_fileset(files):
     for fh in files:
 
 def open_fileset(files):
     for fh in files:

diff --git a/submissions_2_parquet_part2.py b/submissions_2_parquet_part2.py
index bd538e28ef581864c53eaf650e87f67b44b3800c..b88764bb4d04b35fa84ccbbe88f906403dbed947 100644 (file)
--- a/submissions_2_parquet_part2.py
+++ b/submissions_2_parquet_part2.py
@@ -2,20 +2,22 @@
 
 # spark script to make sorted, and partitioned parquet files 
 
 
 # spark script to make sorted, and partitioned parquet files 
 

+import pyspark

 from pyspark.sql import functions as f
 from pyspark.sql import SparkSession
 from pyspark.sql import functions as f
 from pyspark.sql import SparkSession

+import os

 
 spark = SparkSession.builder.getOrCreate()
 
 sc = spark.sparkContext
 
 
 spark = SparkSession.builder.getOrCreate()
 
 sc = spark.sparkContext
 

-conf = SparkConf().setAppName("Reddit submissions to parquet")
+conf = pyspark.SparkConf().setAppName("Reddit submissions to parquet")

 conf = conf.set("spark.sql.shuffle.partitions",2000)
 conf = conf.set('spark.sql.crossJoin.enabled',"true")
 conf = conf.set('spark.debug.maxToStringFields',200)
 sqlContext = pyspark.SQLContext(sc)
 
 conf = conf.set("spark.sql.shuffle.partitions",2000)
 conf = conf.set('spark.sql.crossJoin.enabled',"true")
 conf = conf.set('spark.debug.maxToStringFields',200)
 sqlContext = pyspark.SQLContext(sc)
 

-df = spark.read.parquet("/gscratch/comdata/output/reddit_submissions.parquet_temp")
+df = spark.read.parquet("/gscratch/comdata/output/reddit_submissions_by_subreddit.parquet")

 
 df = df.withColumn("subreddit_2", f.lower(f.col('subreddit')))
 df = df.drop('subreddit')
 
 df = df.withColumn("subreddit_2", f.lower(f.col('subreddit')))
 df = df.drop('subreddit')


@@ -30,13 +32,13 @@ df = df.withColumn("subreddit_hash",f.sha2(f.col("subreddit"), 256)[0:3])
 df = df.repartition("subreddit")
 df2 = df.sort(["subreddit","CreatedAt","id"],ascending=True)
 df2 = df.sortWithinPartitions(["subreddit","CreatedAt","id"],ascending=True)
 df = df.repartition("subreddit")
 df2 = df.sort(["subreddit","CreatedAt","id"],ascending=True)
 df2 = df.sortWithinPartitions(["subreddit","CreatedAt","id"],ascending=True)

-df2.write.parquet("/gscratch/comdata/output/reddit_submissions_by_subreddit.parquet", partitionBy=["Year",'Month'], mode='overwrite')
+df2.write.parquet("/gscratch/comdata/output/reddit_submissions_by_subreddit.parquet2", mode='overwrite',compression='snappy')

 
 
 # # we also want to have parquet files sorted by author then reddit. 
 df = df.repartition("author")
 df3 = df.sort(["author","CreatedAt","id"],ascending=True)
 df3 = df.sortWithinPartitions(["author","CreatedAt","id"],ascending=True)
 
 
 # # we also want to have parquet files sorted by author then reddit. 
 df = df.repartition("author")
 df3 = df.sort(["author","CreatedAt","id"],ascending=True)
 df3 = df.sortWithinPartitions(["author","CreatedAt","id"],ascending=True)

-df3.write.parquet("/gscratch/comdata/output/reddit_submissions_by_author.parquet", partitionBy=["Year",'Month'], mode='overwrite')
+df3.write.parquet("/gscratch/comdata/output/reddit_submissions_by_author.parquet2", mode='overwrite',compression='snappy')

 
 os.remove("/gscratch/comdata/output/reddit_submissions.parquet_temp")
 
 os.remove("/gscratch/comdata/output/reddit_submissions.parquet_temp")