]> code.communitydata.science - mediawiki_dump_tools.git/blobdiff - test/Wikiq_Unit_Test.py
handling empty text
[mediawiki_dump_tools.git] / test / Wikiq_Unit_Test.py
index b32d6a9f9b391779fbd78296df4d24dbcd2e8565..cc27fb52b7037a7aa2de214223cb592db5565ccd 100644 (file)
-import unittest
-import os
-import sys
-import subprocess
-from shutil import copyfile
-import pdb
-
-# with / without pwr DONE
-# with / without url encode DONE
-# with / without collapse user DONE
-# with output to sdtout DONE
-# note that the persistence radius is 7 by default
-# reading various file formats including
-#        7z, gz, bz2, xml  DONE
-# wikia and wikipedia data DONE
-# malformed xmls DONE
-
-class Test_Wikipedia(unittest.TestCase):
-    def setUp(self):
-        if not os.path.exists("test_output"):
-            os.mkdir("test_output")
-
-        self.wiki = 'ikwiki-20180301-pages-meta-history'
-        self.wikiq_out_name =  self.wiki + ".tsv"
-        self.test_output_dir = os.path.join(".", "test_output")
-        self.call_output = os.path.join(self.test_output_dir, self.wikiq_out_name)
-
-        self.infile = "{0}.xml.bz2".format(self.wiki)    
-        self.base_call = "../wikiq {0} -o {1}"
-        self.input_dir = "dumps"
-        self.input_file = os.path.join(".", self.input_dir,self.infile)
-        self.baseline_output_dir = "baseline_output"
-
-    def test_WP_url_encode(self):
-        call = self.base_call.format(self.input_file, self.test_output_dir)
-        call = call + " --url-encode"
-        proc = subprocess.Popen(call,stdout=subprocess.PIPE,shell=True)
-        proc.wait()
-        test_file =  "url-encode_" + self.wikiq_out_name
-        copyfile(self.call_output, os.path.join(self.test_output_dir, test_file))
-        baseline_file = os.path.join(".", self.baseline_output_dir, test_file)
-
-        test_lines = open(os.path.join(self.test_output_dir,test_file))
-        baseline_lines = open(baseline_file)
-        for test, baseline in zip(test_lines, baseline_lines):
-            self.assertEqual(test,baseline)
-
-        test_lines.close()
-        baseline_lines.close()
-
-
-class Test_Basic(unittest.TestCase):
-
-    def setUp(self):
-        if not os.path.exists("test_output"):
-            os.mkdir("test_output")
-
-        self.wiki = 'sailormoon'
-        self.wikiq_out_name =  self.wiki + ".tsv"
-        self.test_output_dir = os.path.join(".", "test_output")
-        self.call_output = os.path.join(self.test_output_dir, self.wikiq_out_name)
-
-        self.infile = "{0}.xml.7z".format(self.wiki)
-        self.base_call = "../wikiq {0} -o {1}"
-        self.input_dir = "dumps"
-        self.input_file = os.path.join(".", self.input_dir,self.infile)
-        self.baseline_output_dir = "baseline_output"
-
-    def test_noargs(self):
-
-        call = self.base_call.format(self.input_file, self.test_output_dir)
-        proc = subprocess.Popen(call,stdout=subprocess.PIPE,shell=True)
-        proc.wait()
-        test_file =  "noargs_" + self.wikiq_out_name
-        copyfile(self.call_output, os.path.join(self.test_output_dir, test_file))
-
-        baseline_file = os.path.join(".", self.baseline_output_dir, test_file)
-
-        test_lines = open(os.path.join(self.test_output_dir,test_file))
-        baseline_lines = open(baseline_file)
-        for test, baseline in zip(test_lines, baseline_lines):
-            self.assertEqual(test,baseline)
-
-        test_lines.close()
-        baseline_lines.close()
-
-    def test_collapse_user(self):
-        call = self.base_call.format(self.input_file, self.test_output_dir)
-        call = call + " --collapse-user"
-
-        proc = subprocess.Popen(call,stdout=subprocess.PIPE,shell=True)
-        proc.wait()
-
-        test_file =  "collapse-user_" + self.wikiq_out_name
-        copyfile(self.call_output, os.path.join(self.test_output_dir, test_file))
-
-        baseline_file = os.path.join(".", self.baseline_output_dir, test_file)
-
-        test_lines = open(os.path.join(self.test_output_dir,test_file))
-        baseline_lines = open(baseline_file)
-        for test, baseline in zip(test_lines, baseline_lines):
-            self.assertEqual(test,baseline)
-
-        test_lines.close()
-        baseline_lines.close()
-
-    def test_pwr(self):
-        call = self.base_call.format(self.input_file, self.test_output_dir)
-        call = call + " --persistence"
-        proc = subprocess.Popen(call,stdout=subprocess.PIPE,shell=True)
-        proc.wait()
-
-        test_file =  "persistence_" + self.wikiq_out_name
-        copyfile(self.call_output, os.path.join(self.test_output_dir, test_file))
-
-        baseline_file = os.path.join(".", self.baseline_output_dir, test_file)
-
-        test_lines = open(os.path.join(self.test_output_dir,test_file))
-        baseline_lines = open(baseline_file)
-        for test, baseline in zip(test_lines, baseline_lines):
-            self.assertEqual(test,baseline)
-
-        test_lines.close()
-        baseline_lines.close()
-
-    def test_url_encode(self):
-        call = self.base_call.format(self.input_file, self.test_output_dir)
-        call = call + " --url-encode"
-        proc = subprocess.Popen(call,stdout=subprocess.PIPE,shell=True)
-        proc.wait()
-        test_file =  "url-encode_" + self.wikiq_out_name
-        copyfile(self.call_output, os.path.join(self.test_output_dir, test_file))
-        baseline_file = os.path.join(".", self.baseline_output_dir, test_file)
-
-        test_lines = open(os.path.join(self.test_output_dir,test_file))
-        baseline_lines = open(baseline_file)
-        for test, baseline in zip(test_lines, baseline_lines):
-            self.assertEqual(test,baseline)
-
-        test_lines.close()
-        baseline_lines.close()
-
-class Test_Malformed(unittest.TestCase):
-
-    def setUp(self):
-        if not os.path.exists("test_output"):
-            os.mkdir("test_output")
-
-        self.wiki = 'twinpeaks'
-        self.wikiq_out_name =  self.wiki + ".tsv"
-        self.test_output_dir = os.path.join(".", "test_output")
-        self.call_output = os.path.join(self.test_output_dir, self.wikiq_out_name)
-
-        self.infile = "{0}.xml.7z".format(self.wiki)
-        self.base_call = "../wikiq {0} -o {1}"
-        self.input_dir = "dumps"
-        self.input_file = os.path.join(".", self.input_dir,self.infile)
-
-
-    def test_malformed_noargs(self):
-
-        call = self.base_call.format(self.input_file, self.test_output_dir)
-        proc = subprocess.Popen(call,stdout=subprocess.PIPE,stderr=subprocess.PIPE, shell=True)
-        proc.wait()
-        outs, errs = proc.communicate()
-        errlines = str(errs).split("\\n")
-        self.assertEqual(errlines[-2],'xml.etree.ElementTree.ParseError: no element found: line 1369, column 0')
-
-class Test_Stdout(unittest.TestCase):
-
-    def setUp(self):
-        self.wiki = 'sailormoon'
-        self.wikiq_out_name =  self.wiki + ".tsv"
-
-        self.infile = "{0}.xml.7z".format(self.wiki)
-        self.base_call = "../wikiq {0} --stdout"
-        self.input_dir = "dumps"
-        self.input_file = os.path.join(".", self.input_dir,self.infile)
-        self.baseline_output_dir = "baseline_output"
-
-    def test_noargs(self):
-
-        call = self.base_call.format(self.input_file)
-        proc = subprocess.run(call,stdout=subprocess.PIPE,shell=True)
-        outs = proc.stdout.decode('utf-8')
-        
-        test_file = "noargs_" + self.wikiq_out_name
-        baseline_file = os.path.join(".", self.baseline_output_dir, test_file)
-
-        test_lines = outs.splitlines(True)
-        baseline_lines = open(baseline_file)
-        for test, baseline in zip(test_lines, baseline_lines):
-            self.assertEqual(test,baseline)
-
-        # test_file =  "noargs_" + self.wikiq_out_name
-        # copyfile(self.call_output, os.path.join(self.test_output_dir, test_file))
-
-        # baseline_file = os.path.join(".", self.baseline_output_dir, test_file)
-
-        # test_lines = open(os.path.join(self.test_output_dir,test_file))
-        # baseline_lines = open(baseline_file)
-        # for test, baseline in zip(test_lines, baseline_lines):
-        #     self.assertEqual(test,baseline)
-        # test_lines.close()
-        # baseline_lines.close()
-
-        
-if __name__ == '__main__':
-    unittest.main()
+import unittest\r
+import os\r
+import subprocess\r
+from shutil import copyfile\r
+import pandas as pd\r
+from pandas.util.testing import assert_frame_equal\r
+from io import StringIO\r
+\r
+# with / without pwr DONE\r
+# with / without url encode DONE\r
+# with / without collapse user DONE\r
+# with output to sdtout DONE\r
+# note that the persistence radius is 7 by default\r
+# reading various file formats including\r
+#        7z, gz, bz2, xml  DONE\r
+# wikia and wikipedia data DONE\r
+# malformed xmls DONE\r
+\r
+class Test_Wikipedia(unittest.TestCase):\r
+    def setUp(self):\r
+        if not os.path.exists("test_output"):\r
+            os.mkdir("test_output")\r
+\r
+        self.wiki = 'ikwiki-20180301-pages-meta-history'\r
+        self.wikiq_out_name =  self.wiki + ".tsv"\r
+        self.test_output_dir = os.path.join(".", "test_output")\r
+        self.call_output = os.path.join(self.test_output_dir, self.wikiq_out_name)\r
+\r
+        self.infile = "{0}.xml.bz2".format(self.wiki)    \r
+        self.base_call = "../wikiq {0} -o {1}"\r
+        self.input_dir = "dumps"\r
+        self.input_file = os.path.join(".", self.input_dir,self.infile)\r
+        self.baseline_output_dir = "baseline_output"\r
+\r
+    def test_WP_url_encode(self):\r
+        test_filename =  "url-encode_" + self.wikiq_out_name\r
+        test_file = os.path.join(self.test_output_dir, test_filename)\r
+        if os.path.exists(test_file):\r
+            os.remove(test_file)\r
+        \r
+        call = self.base_call.format(self.input_file, self.test_output_dir)\r
+        call = call + " --url-encode"\r
+        proc = subprocess.Popen(call,stdout=subprocess.PIPE,shell=True)\r
+        proc.wait()\r
+\r
+        copyfile(self.call_output, test_file)\r
+        baseline_file = os.path.join(".", self.baseline_output_dir, test_filename)\r
+\r
+        # as a test let's make sure that we get equal data frames\r
+        test = pd.read_table(test_file)\r
+        baseline = pd.read_table(baseline_file)\r
+        assert_frame_equal(test,baseline)\r
+\r
+    def test_WP_namespaces(self):\r
+        print(os.path.abspath('.'))\r
+        test_filename =  "namespaces_" + self.wikiq_out_name\r
+        test_file = os.path.join(self.test_output_dir, test_filename)\r
+        if os.path.exists(test_file):\r
+            os.remove(test_file)\r
+        \r
+        call = self.base_call.format(self.input_file, self.test_output_dir)\r
+        call = call + " -n 0 -n 1"\r
+        print(call)\r
+        proc = subprocess.Popen(call,stdout=subprocess.PIPE,shell=True)\r
+        proc.wait()\r
+        copyfile(self.call_output, test_file)\r
+        baseline_file = os.path.join(os.path.abspath("."), self.baseline_output_dir, test_filename)\r
+\r
+        # as a test let's make sure that we get equal data frames\r
+        test = pd.read_table(test_file)\r
+        num_wrong_ns = sum(~ test.namespace.isin({0,1}))\r
+        self.assertEqual(num_wrong_ns, 0)\r
+        baseline = pd.read_table(baseline_file)\r
+        assert_frame_equal(test,baseline)\r
+\r
+    def test_WP_revert_radius(self):\r
+        print(os.path.abspath('.'))\r
+        test_filename =  "revert_radius_" + self.wikiq_out_name\r
+        test_file = os.path.join(self.test_output_dir, test_filename)\r
+        if os.path.exists(test_file):\r
+            os.remove(test_file)\r
+        \r
+        call = self.base_call.format(self.input_file, self.test_output_dir)\r
+        call = call + " -n 0 -n 1 -rr 1"\r
+        print(call)\r
+        proc = subprocess.Popen(call,stdout=subprocess.PIPE,shell=True)\r
+        proc.wait()\r
+        copyfile(self.call_output, test_file)\r
+        baseline_file = os.path.join(os.path.abspath("."), self.baseline_output_dir, test_filename)\r
+\r
+        # as a test let's make sure that we get equal data frames\r
+        test = pd.read_table(test_file)\r
+        num_wrong_ns = sum(~ test.namespace.isin({0,1}))\r
+        self.assertEqual(num_wrong_ns, 0)\r
+        baseline = pd.read_table(baseline_file)\r
+        assert_frame_equal(test,baseline)\r
+\r
+\r
+\r
+class Test_Basic(unittest.TestCase):\r
+\r
+    def setUp(self):\r
+        if not os.path.exists("test_output"):\r
+            os.mkdir("test_output")\r
+\r
+        self.wiki = 'sailormoon'\r
+        self.wikiq_out_name =  self.wiki + ".tsv"\r
+        self.test_output_dir = os.path.join(".", "test_output")\r
+        self.call_output = os.path.join(self.test_output_dir, self.wikiq_out_name)\r
+\r
+        self.infile = "{0}.xml.7z".format(self.wiki)\r
+        self.base_call = "../wikiq {0} -o {1}"\r
+        self.input_dir = "dumps"\r
+        self.input_file = os.path.join(".", self.input_dir,self.infile)\r
+        self.baseline_output_dir = "baseline_output"\r
+\r
+    def test_noargs(self):\r
+\r
+        test_filename =  "noargs_" + self.wikiq_out_name\r
+        test_file = os.path.join(self.test_output_dir, test_filename)\r
+        if os.path.exists(test_file):\r
+            os.remove(test_file)\r
+        \r
+        call = self.base_call.format(self.input_file, self.test_output_dir)\r
+        proc = subprocess.Popen(call,stdout=subprocess.PIPE,shell=True)\r
+        proc.wait()\r
+\r
+        copyfile(self.call_output, test_file)\r
+\r
+        baseline_file = os.path.join(".", self.baseline_output_dir, test_filename)\r
+\r
+        test = pd.read_table(test_file)\r
+        baseline = pd.read_table(baseline_file)\r
+        assert_frame_equal(test,baseline)\r
+\r
+\r
+    def test_collapse_user(self):\r
+        test_filename =  "collapse-user_" + self.wikiq_out_name\r
+        test_file = os.path.join(self.test_output_dir, test_filename)\r
+        if os.path.exists(test_file):\r
+            os.remove(test_file)\r
+        \r
+        call = self.base_call.format(self.input_file, self.test_output_dir)\r
+        call = call + " --collapse-user"\r
+\r
+        proc = subprocess.Popen(call,stdout=subprocess.PIPE,shell=True)\r
+        proc.wait()\r
+\r
+        copyfile(self.call_output, test_file)\r
+\r
+        baseline_file = os.path.join(".", self.baseline_output_dir, test_filename)\r
+        test = pd.read_table(test_file)\r
+        baseline = pd.read_table(baseline_file)\r
+        assert_frame_equal(test,baseline)\r
+\r
+    def test_pwr_segment(self):\r
+        test_filename =  "persistence_segment_" + self.wikiq_out_name\r
+        test_file = os.path.join(self.test_output_dir, test_filename)\r
+        if os.path.exists(test_file):\r
+            os.remove(test_file)\r
+        \r
+        call = self.base_call.format(self.input_file, self.test_output_dir)\r
+        call = call + " --persistence segment"\r
+        proc = subprocess.Popen(call,stdout=subprocess.PIPE,shell=True)\r
+        proc.wait()\r
+\r
+\r
+        copyfile(self.call_output, test_file)\r
+\r
+        baseline_file = os.path.join(".", self.baseline_output_dir, test_filename)\r
+\r
+        test = pd.read_table(test_file)\r
+        baseline = pd.read_table(baseline_file)\r
+        assert_frame_equal(test,baseline)\r
+\r
+    def test_pwr_legacy(self):\r
+        test_filename =  "persistence_legacy_" + self.wikiq_out_name\r
+        test_file = os.path.join(self.test_output_dir, test_filename)\r
+        if os.path.exists(test_file):\r
+            os.remove(test_file)\r
+        \r
+        call = self.base_call.format(self.input_file, self.test_output_dir)\r
+        call = call + " --persistence legacy"\r
+        proc = subprocess.Popen(call,stdout=subprocess.PIPE,shell=True)\r
+        proc.wait()\r
+\r
+\r
+        copyfile(self.call_output, test_file)\r
+\r
+        baseline_file = os.path.join(".", self.baseline_output_dir, test_filename)\r
+\r
+        test = pd.read_table(test_file)\r
+        baseline = pd.read_table(baseline_file)\r
+        assert_frame_equal(test,baseline)\r
+\r
+    def test_pwr(self):\r
+        test_filename =  "persistence_" + self.wikiq_out_name\r
+        test_file = os.path.join(self.test_output_dir, test_filename)\r
+        if os.path.exists(test_file): \r
+           os.remove(test_file)\r
+        \r
+        call = self.base_call.format(self.input_file, self.test_output_dir)\r
+        call = call + " --persistence"\r
+        proc = subprocess.Popen(call,stdout=subprocess.PIPE,shell=True)\r
+        proc.wait()\r
+\r
+\r
+        copyfile(self.call_output, test_file)\r
+\r
+        baseline_file = os.path.join(".", self.baseline_output_dir, test_filename)\r
+\r
+        test = pd.read_table(test_file)\r
+        baseline = pd.read_table(baseline_file)\r
+        assert_frame_equal(test,baseline)\r
+\r
+\r
+    def test_url_encode(self):\r
+        test_filename =  "url-encode_" + self.wikiq_out_name\r
+\r
+        test_file = os.path.join(self.test_output_dir, test_filename)\r
+        if os.path.exists(test_file):\r
+            os.remove(test_file)\r
+        \r
+        call = self.base_call.format(self.input_file, self.test_output_dir)\r
+        call = call + " --url-encode"\r
+        proc = subprocess.Popen(call,stdout=subprocess.PIPE,shell=True)\r
+        proc.wait()\r
+\r
+        copyfile(self.call_output, test_file)\r
+        baseline_file = os.path.join(".", self.baseline_output_dir, test_filename)\r
+        test = pd.read_table(test_file)\r
+        baseline = pd.read_table(baseline_file)\r
+        assert_frame_equal(test,baseline)\r
+\r
+\r
+class Test_Malformed(unittest.TestCase):\r
+    def setUp(self):\r
+        if not os.path.exists("test_output"):\r
+            os.mkdir("test_output")\r
+\r
+        self.wiki = 'twinpeaks'\r
+        self.wikiq_out_name =  self.wiki + ".tsv"\r
+        self.test_output_dir = os.path.join(".", "test_output")\r
+        self.call_output = os.path.join(self.test_output_dir, self.wikiq_out_name)\r
+\r
+        self.infile = "{0}.xml.7z".format(self.wiki)\r
+        self.base_call = "../wikiq {0} -o {1}"\r
+        self.input_dir = "dumps"\r
+        self.input_file = os.path.join(".", self.input_dir,self.infile)\r
+\r
+\r
+    def test_malformed_noargs(self):\r
+\r
+        call = self.base_call.format(self.input_file, self.test_output_dir)\r
+        proc = subprocess.Popen(call,stdout=subprocess.PIPE,stderr=subprocess.PIPE, shell=True)\r
+        proc.wait()\r
+        outs, errs = proc.communicate()\r
+        errlines = str(errs).split("\\n")\r
+        self.assertEqual(errlines[-2],'xml.etree.ElementTree.ParseError: no element found: line 1369, column 0')\r
+\r
+class Test_Stdout(unittest.TestCase):\r
+\r
+    def setUp(self):\r
+        self.wiki = 'sailormoon'\r
+        self.wikiq_out_name =  self.wiki + ".tsv"\r
+\r
+        self.infile = "{0}.xml.7z".format(self.wiki)\r
+        self.base_call = "../wikiq {0} --stdout"\r
+        self.input_dir = "dumps"\r
+        self.input_file = os.path.join(".", self.input_dir,self.infile)\r
+        self.baseline_output_dir = "baseline_output"\r
+\r
+    def test_noargs(self):\r
+\r
+        call = self.base_call.format(self.input_file)\r
+        proc = subprocess.run(call,stdout=subprocess.PIPE,shell=True)\r
+        outs = proc.stdout.decode("utf8")\r
+\r
+        test_file = "noargs_" + self.wikiq_out_name\r
+        baseline_file = os.path.join(".", self.baseline_output_dir, test_file)\r
+        print(baseline_file)\r
+        test = pd.read_table(StringIO(outs))\r
+        baseline = pd.read_table(baseline_file)\r
+        assert_frame_equal(test,baseline)\r
+\r
+class Test_Regex(unittest.TestCase):\r
+\r
+    def setUp(self):\r
+        self.wiki = 'emptytext'\r
+        self.wikiq_out_name = self.wiki + '.tsv'\r
+        self.infile = "{0}.xml.bz2".format(self.wiki)\r
+\r
+        self.input_dir = "dumps"\r
+        self.input_file = os.path.join(".", self.input_dir,self.infile)\r
+\r
+        if not os.path.exists("test_output"):\r
+            os.mkdir("test_output")\r
+\r
+        self.test_output_dir = os.path.join(".", "test_output")\r
+        self.call_output = os.path.join(self.test_output_dir, self.wikiq_out_name)\r
+        # we have two base calls, one for checking inputs and the other for checking outputs\r
+        self.base_call = "../wikiq {0}"\r
+        self.base_call_outs = "../wikiq {0} -o {1}"\r
+\r
+        self.baseline_output_dir = "baseline_output"\r
+\r
+        # sample inputs for checking that bad inputs get terminated / test_regex_inputs\r
+        self.bad_inputs_list = [\r
+            #label is missing            \r
+            "-RP '\\b\\d+\\b'", \r
+            #number of reg and number of labels do not match \r
+            "-RP 'NPO V' -RP THE -RPl testlabel",\r
+            #cp but rp label\r
+            "-CP '(Tamil|Li)' -RPl testlabel",\r
+            #regex is missing\r
+            "-CPl testlabel",\r
+            "-RP '\\b\\w{3}\\b' -RPl threeletters -CP '\\b\\w{3}\\b'"\r
+        ]\r
+\r
+        # sample inputs for checking the outcomes of good inputs / test_basic_regex\r
+        self.good_inputs_list = [\r
+            "-RP '\\b\\d{3}\\b' -RPl threedigits",\r
+            "-RP 'TestCase' -RP 'page' -RPl testcases -RPl page_word",\r
+            "-CP 'Chevalier' -CPl chev_com -RP 'welcome to Wikipedia' -RPl wiki_welcome -CP 'Warning' -CPl warning",\r
+            "-CP 'WP:EVADE' -CPl wp_evade"         \r
+        ]\r
+\r
+        \r
+        self.cap_inputs_list = [\r
+            "-RP 'Li Chevalier' -RPl li_cheval -CP '(?P<letter>\\b[a-zA-Z]{3}\\b)|(?P<number>\\b\\d+\\b)|(?P<cat>\\bcat\\b)' -CPl three",\r
+            "-CP '(?P<a>\\bTestCaseA\\b)|(?P<b>\\bTestCaseB\\b)|(?P<c>\\bTestCaseC\\b)|(?P<d>\\bTestCaseD\\b)' -CPl testcase -RP '(?P<npov>npov|NPOV)|(?P<neutral>neutral point of view)' -RPl npov"\r
+        ]\r
+\r
+\r
+\r
+    def test_regex_inputs(self):\r
+        for input in self.bad_inputs_list:\r
+            call = self.base_call.format(self.input_file)\r
+            call = call + " --stdout " + input\r
+            #print(call)\r
+            proc = subprocess.Popen(call,stdout=subprocess.PIPE,stderr=subprocess.PIPE,shell=True)\r
+            stdout,stderr = proc.communicate()\r
+            #print(proc.returncode)\r
+            \r
+            # we want to check that the bad inputs were caught and sys.exit is stopping the code\r
+            #print(stderr.decode("utf-8"))\r
+            self.assertNotEqual(proc.returncode,0)\r
+\r
+    def test_basic_regex(self):\r
+        for i, input in enumerate(self.good_inputs_list):\r
+\r
+            test_filename = "basic_{0}_{1}.tsv".format(self.wikiq_out_name[:-4], str(i))\r
+            #print(test_filename)\r
+            test_file = os.path.join(self.test_output_dir, test_filename)\r
+            if os.path.exists(test_file):\r
+                os.remove(test_file)\r
+\r
+            call = self.base_call_outs.format(self.input_file, self.test_output_dir)\r
+            call = call + " " + input\r
+            #print(call)\r
+\r
+            proc = subprocess.Popen(call,stdout=subprocess.PIPE,stderr=subprocess.PIPE,shell=True)\r
+            proc.wait()\r
+            copyfile(self.call_output, test_file)\r
+\r
+            test = pd.read_table(test_file)\r
+            \r
+            baseline_file = os.path.join(".", self.baseline_output_dir, test_filename)\r
+            baseline = pd.read_table(baseline_file)\r
+            #assert_frame_equal(test, baseline)\r
+            #print(i)\r
+\r
+\r
+    def test_capturegroup_regex(self):\r
+        for i, input in enumerate(self.cap_inputs_list):\r
+            test_filename = "capturegroup_{0}_{1}.tsv".format(self.wikiq_out_name[:-4], str(i))\r
+            #print(test_filename)\r
+            test_file = os.path.join(self.test_output_dir, test_filename)\r
+            if os.path.exists(test_file):\r
+                os.remove(test_file)\r
+\r
+            call = self.base_call_outs.format(self.input_file, self.test_output_dir)\r
+            call = call + " " + input\r
+            #print(call)\r
+\r
+            proc = subprocess.Popen(call,stdout=subprocess.PIPE,stderr=subprocess.PIPE,shell=True)\r
+            proc.wait()\r
+\r
+            copyfile(self.call_output, test_file)\r
+            \r
+            test = pd.read_table(test_file)\r
+            \r
+            baseline_file = os.path.join(".", self.baseline_output_dir, test_filename)\r
+            baseline = pd.read_table(baseline_file)\r
+            #assert_frame_equal(test, baseline)\r
+\r
+\r
+if __name__ == '__main__':\r
+    unittest.main()\r

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