simulations/Makefile

   1
   2 SHELL=bash
   3
   4 Ns=[1000, 5000, 10000]
   5 ms=[100, 200, 400]
   6 seeds=[$(shell seq -s, 1 500)]
   7 explained_variances=[0.1]
   8
   9 all:remembr.RDS remember_irr.RDS
  10 supplement: remember_robustness_misspec.RDS
  11
  12 srun=sbatch --wait --verbose run_job.sbatch
  13
  14
  15 joblists:example_1_jobs example_2_jobs example_3_jobs
  16
  17 # test_true_z_jobs: test_true_z.R simulation_base.R
  18 #       sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript test_true_z.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["test_true_z.feather"], "y_explained_variancevari":${explained_variances}, "Bzx":${Bzx}}' --outfile test_true_z_jobsb
  19
  20 # test_true_z.feather: test_true_z_jobs
  21 #       rm -f test_true_z.feather
  22 #       sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 test_true_z_jobs
  23 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 test_true_z_jobs
  24
  25
  26 example_1_jobs: 01_two_covariates.R simulation_base.R grid_sweep.py pl_methods.R
  27         sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"], "y_explained_variance":${explained_variances}, "Bzx":[1]}' --outfile example_1_jobs
  28
  29 example_1.feather: example_1_jobs
  30         rm -f example_1.feather
  31         sbatch --wait --verbose --array=1-1000  run_simulation.sbatch 0 example_1_jobs
  32         sbatch --wait --verbose --array=1001-2000  run_simulation.sbatch 0 example_1_jobs
  33         sbatch --wait --verbose --array=2001-3000  run_simulation.sbatch 0 example_1_jobs
  34         sbatch --wait --verbose --array=3001-4000  run_simulation.sbatch 0 example_1_jobs
  35         sbatch --wait --verbose --array=4001-$(shell cat example_1_jobs | wc -l)  run_simulation.sbatch 0 example_1_jobs
  36
  37 example_2_jobs: 02_indep_differential.R simulation_base.R grid_sweep.py pl_methods.R
  38         sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 02_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[1], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y*z*x"]}' --outfile example_2_jobs
  39
  40 example_2.feather: example_2_jobs
  41         rm -f example_2.feather
  42         sbatch --wait --verbose --array=1-1000  run_simulation.sbatch 0 example_2_jobs
  43         sbatch --wait --verbose --array=1001-2000  run_simulation.sbatch 0 example_2_jobs
  44         sbatch --wait --verbose --array=2001-3000  run_simulation.sbatch 0 example_2_jobs
  45         sbatch --wait --verbose --array=3001-4000  run_simulation.sbatch 0 example_2_jobs
  46         sbatch --wait --verbose --array=4001-$(shell cat example_2_jobs | wc -l)  run_simulation.sbatch 0 example_2_jobs
  47
  48
  49 # example_2_B_jobs: example_2_B.R
  50 #       sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs
  51
  52 # example_2_B.feather: example_2_B_jobs
  53 #       rm -f example_2_B.feather
  54 #       sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs
  55
  56 example_3_jobs: 03_depvar.R simulation_base.R grid_sweep.py pl_methods.R
  57         sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 03_depvar.R" --arg_dict '{"N":${Ns},"m":${ms}, "Bxy":[0.7],"Bzy":[-0.7],"seed":${seeds}, "outfile":["example_3.feather"], "y_explained_variance":${explained_variances}}' --outfile example_3_jobs
  58
  59 example_3.feather: example_3_jobs
  60         rm -f example_3.feather
  61         sbatch --wait --verbose --array=1-1000  run_simulation.sbatch 0 example_3_jobs
  62         sbatch --wait --verbose --array=1001-2000  run_simulation.sbatch 0 example_3_jobs
  63         sbatch --wait --verbose --array=2001-3000  run_simulation.sbatch 0 example_3_jobs
  64         sbatch --wait --verbose --array=3001-4000  run_simulation.sbatch 0 example_3_jobs
  65         sbatch --wait --verbose --array=4001-$(shell cat example_3_jobs | wc -l)  run_simulation.sbatch 0 example_3_jobs
  66
  67 example_4_jobs: 04_depvar_differential.R simulation_base.R grid_sweep.py pl_methods.R
  68         sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 04_depvar_differential.R" --arg_dict '{"N":${Ns},"Bxy":[0.7],"Bzy":[-0.7],"m":${ms}, "seed":${seeds}, "outfile":["example_4.feather"], "z_bias":[0.5]}' --outfile example_4_jobs
  69
  70 example_4.feather: example_4_jobs
  71         rm -f example_4.feather
  72         sbatch --wait --verbose --array=1-1000  run_simulation.sbatch 0 example_4_jobs
  73         sbatch --wait --verbose --array=1001-2000  run_simulation.sbatch 0 example_4_jobs
  74         sbatch --wait --verbose --array=2001-3000  run_simulation.sbatch 0 example_4_jobs
  75         sbatch --wait --verbose --array=3001-4000  run_simulation.sbatch 0 example_4_jobs
  76         sbatch --wait --verbose --array=4001-$(shell cat example_4_jobs | wc -l)  run_simulation.sbatch 0 example_4_jobs
  77
  78
  79
  80 remembr.RDS:example_1.feather example_2.feather example_3.feather example_4.feather plot_example.R plot_dv_example.R summarize_estimator.R
  81         rm -f remembr.RDS
  82         ${srun} Rscript plot_example.R --infile example_1.feather --name "plot.df.example.1"
  83         ${srun} Rscript plot_example.R --infile example_2.feather --name "plot.df.example.2"
  84         ${srun} Rscript plot_dv_example.R --infile example_3.feather --name "plot.df.example.3"
  85         ${srun} Rscript plot_dv_example.R --infile example_4.feather --name "plot.df.example.4"
  86
  87
  88 irr_Ns = [1000]
  89 irr_ms = [150,300,600]
  90 irr_seeds=${seeds}
  91 irr_explained_variances=${explained_variances}
  92 irr_coder_accuracy=[0.80]
  93
  94 example_5_jobs: 05_irr_indep.R irr_simulation_base.R grid_sweep.py pl_methods.R measerr_methods.R
  95         sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 05_irr_indep.R" --arg_dict '{"N":${irr_Ns},"m":${irr_ms}, "seed":${irr_seeds}, "outfile":["example_5.feather"], "y_explained_variance":${irr_explained_variances}, "coder_accuracy":${irr_coder_accuracy}}' --outfile example_5_jobs
  96
  97 example_5.feather:example_5_jobs
  98         rm -f example_5.feather
  99         sbatch --wait --verbose --array=1-1000  run_simulation.sbatch 0 example_5_jobs
 100         sbatch --wait --verbose --array=1001-$(shell cat example_5_jobs | wc -l)  run_simulation.sbatch 1000 example_5_jobs
 101         # sbatch --wait --verbose --array=2001-3000  run_simulation.sbatch 2000 example_5_jobs
 102         # sbatch --wait --verbose --array=3001-4000  run_simulation.sbatch 3000 example_5_jobs
 103         # sbatch --wait --verbose --array=2001-$(shell cat example_5_jobs | wc -l)  run_simulation.sbatch 4000 example_5_jobs
 104
 105
 106
 107 # example_6_jobs: 06_irr_dv.R irr_dv_simulation_base.R grid_sweep.py pl_methods.R
 108 #       sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 06_irr_dv.R" --arg_dict '{"N":${irr_Ns},"m":${irr_ms}, "seed":${irr_seeds}, "outfile":["example_6.feather"], "y_explained_variance":${irr_explained_variances},"coder_accuracy":${irr_coder_accuracy}}' --outfile example_6_jobs
 109
 110 # example_6.feather:example_6_jobs
 111 #       rm -f example_6.feather
 112 #       sbatch --wait --verbose --array=1-1000  run_simulation.sbatch 0 example_6_jobs
 113 #       sbatch --wait --verbose --array=1001-2000  run_simulation.sbatch 1000 example_6_jobs
 114 #       sbatch --wait --verbose --array=2001-$(shell cat example_6_jobs | wc -l)  run_simulation.sbatch 2000 example_6_jobs
 115
 116
 117 remember_irr.RDS: example_5.feather plot_irr_example.R plot_irr_dv_example.R summarize_estimator.R
 118         rm -f remember_irr.RDS
 119         sbatch --wait --verbose run_job.sbatch Rscript plot_irr_example.R --infile example_5.feather --name "plot.df.example.5"
 120 #       sbatch --wait --verbose run_job.sbatch Rscript plot_irr_dv_example.R --infile example_6.feather --name "plot.df.example.6"
 121
 122
 123 robustness_1_jobs: 02_indep_differential.R simulation_base.R grid_sweep.py
 124         sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 02_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_1.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y+x"], "truth_formula":["x~1"]}' --outfile robustness_1_jobs
 125
 126
 127 robustness_1.feather: robustness_1_jobs
 128         rm -f robustness_1.feather
 129         sbatch --wait --verbose --array=1-1000  run_simulation.sbatch 0 robustness_1_jobs
 130         sbatch --wait --verbose --array=1001-2000  run_simulation.sbatch 0 robustness_1_jobs
 131         sbatch --wait --verbose --array=2001-3000  run_simulation.sbatch 0 robustness_1_jobs
 132         sbatch --wait --verbose --array=3001-4000  run_simulation.sbatch 0 robustness_1_jobs
 133         sbatch --wait --verbose --array=4001-$(shell cat robustness_1_jobs | wc -l)  run_simulation.sbatch 0 robustness_1_jobs
 134
 135 robustness_1.RDS: robustness_1.feather
 136         rm -f robustness_1.RDS
 137         ${srun} Rscript plot_example.R --infile $< --name "robustness_1" --remember-file $@
 138
 139 robustness_1_dv_jobs: simulation_base.R 04_depvar_differential.R grid_sweep.py
 140         ${srun} bash -c "source ~/.bashrc && grid_sweep.py --command 'Rscript 04_depvar_differential.R' --arg_dict \"{'N':${Ns},'m':${ms}, 'seed':${seeds}, 'outfile':['robustness_1_dv.feather'], 'y_explained_variance':${explained_variances}, 'proxy_formula':['w_pred~y']}\" --outfile robustness_1_dv_jobs"
 141
 142
 143 robustness_1_dv.feather: robustness_1_dv_jobs
 144         rm -f robustness_1_dv.feather
 145         sbatch --wait --verbose --array=1-$(shell cat example_3_jobs | wc -l)  run_simulation.sbatch 0 robustness_1_dv_jobs
 146
 147
 148 robustness_1_dv.RDS: robustness_1_dv.feather
 149         rm -f $@
 150         ${srun} Rscript plot_dv_example.R --infile $< --name "robustness_1_dv" --outfile $@
 151
 152
 153 robustness_2_jobs_p1: grid_sweep.py 01_two_covariates.R simulation_base.R grid_sweep.py
 154         rm -f $@
 155         ${srun} $< --command 'Rscript 01_two_covariates.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_2.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y+x"], "truth_formula":["x~z"], "prediction_accuracy":[0.60,0.65]}' --outfile $@
 156
 157 robustness_2_jobs_p2: grid_sweep.py 01_two_covariates.R simulation_base.R grid_sweep.py
 158         rm -f $@
 159         ${srun} $< --command 'Rscript 01_two_covariates.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_2.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y+x"], "truth_formula":["x~z"], "prediction_accuracy":[0.70,0.75]}' --outfile $@
 160
 161 robustness_2_jobs_p3: grid_sweep.py 01_two_covariates.R simulation_base.R grid_sweep.py
 162         rm -f $@
 163         ${srun} $< --command 'Rscript 01_two_covariates.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_2.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y+x"], "truth_formula":["x~z"], "prediction_accuracy":[0.80,0.85]}' --outfile $@
 164
 165 robustness_2_jobs_p4: grid_sweep.py 01_two_covariates.R simulation_base.R grid_sweep.py
 166         rm -f $@
 167         ${srun} $< --command 'Rscript 01_two_covariates.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_2.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y+x"], "truth_formula":["x~z"], "prediction_accuracy":[0.90,0.95]}' --outfile $@
 168
 169 START=0
 170 END_1=$(shell cat robustness_2_jobs_p1 | wc -l)
 171 END_2=$(shell cat robustness_2_jobs_p2 | wc -l)
 172 END_3=$(shell cat robustness_2_jobs_p3 | wc -l)
 173 END_4=$(shell cat robustness_2_jobs_p4 | wc -l)
 174 STEP=1000
 175 ONE=1
 176 ITEMS_1=$(shell seq $(START) $(STEP) $(END_1))
 177 ITEMS_2=$(shell seq $(START) $(STEP) $(END_2))
 178 ITEMS_3=$(shell seq $(START) $(STEP) $(END_3))
 179 ITEMS_4=$(shell seq $(START) $(STEP) $(END_4))
 180
 181 robustness_2.feather: robustness_2_jobs_p1 robustness_2_jobs_p2 robustness_2_jobs_p3 robustness_2_jobs_p4
 182         $(foreach item,$(ITEMS_1),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_2_jobs_p1)
 183         $(foreach item,$(ITEMS_2),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_2_jobs_p2;)
 184         $(foreach item,$(ITEMS_3),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_2_jobs_p3;)
 185         $(foreach item,$(ITEMS_4),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_2_jobs_p4;)
 186
 187
 188 robustness_2_dv_jobs_p1: grid_sweep.py 03_depvar.R simulation_base.R grid_sweep.py
 189         rm -f $@
 190         ${srun} $< --command 'Rscript 03_depvar.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_2.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "prediction_accuracy":[0.60,0.65]}' --outfile $@
 191
 192 robustness_2_dv_jobs_p2: grid_sweep.py 03_depvar.R simulation_base.R grid_sweep.py
 193         rm -f $@
 194         ${srun} $< --command 'Rscript 03_depvar.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_2.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "prediction_accuracy":[0.70,0.75]}' --outfile $@
 195
 196 robustness_2_dv_jobs_p3: grid_sweep.py 03_depvar.R simulation_base.R grid_sweep.py
 197         rm -f $@
 198         ${srun} $< --command 'Rscript 03_depvar.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_2.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "prediction_accuracy":[0.80,0.85]}' --outfile $@
 199
 200 robustness_2_dv_jobs_p4: grid_sweep.py 03_depvar.R simulation_base.R grid_sweep.py
 201         rm -f $@
 202         ${srun} $< --command 'Rscript 01_two_covariates.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_2.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "prediction_accuracy":[0.90,0.95]}' --outfile $@
 203
 204 START=0
 205 END_1=$(shell cat robustness_2_dv_jobs_p1 | wc -l)
 206 END_2=$(shell cat robustness_2_dv_jobs_p2 | wc -l)
 207 END_3=$(shell cat robustness_2_dv_jobs_p3 | wc -l)
 208 END_4=$(shell cat robustness_2_dv_jobs_p4 | wc -l)
 209 STEP=1000
 210 ONE=1
 211 ITEMS_1=$(shell seq $(START) $(STEP) $(END_1))
 212 ITEMS_2=$(shell seq $(START) $(STEP) $(END_2))
 213 ITEMS_3=$(shell seq $(START) $(STEP) $(END_3))
 214 ITEMS_4=$(shell seq $(START) $(STEP) $(END_4))
 215
 216 robustness_2_dv.feather: robustness_2_dv_jobs_p1 robustness_2_dv_jobs_p2 robustness_2_dv_jobs_p3 robustness_2_dv_jobs_p4
 217         $(foreach item,$(ITEMS_1),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_2_dv_jobs_p1)
 218         $(foreach item,$(ITEMS_2),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_2_dv_jobs_p2;)
 219         $(foreach item,$(ITEMS_3),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_2_dv_jobs_p3;)
 220         $(foreach item,$(ITEMS_4),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_2_dv_jobs_p4;)
 221
 222
 223
 224 robustness_3_jobs_p1: grid_sweep.py 01_two_covariates.R simulation_base.R grid_sweep.py
 225         rm -f $@
 226         ${srun} $< --command 'Rscript 01_two_covariates.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_3.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3],"Px":[0.5,0.6], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y+x"], "truth_formula":["x~z"], "prediction_accuracy":[0.85]}' --outfile $@
 227
 228 robustness_3_jobs_p2: grid_sweep.py 01_two_covariates.R simulation_base.R grid_sweep.py
 229         rm -f $@
 230         ${srun} $< --command 'Rscript 01_two_covariates.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_3.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3],"Px":[0.7,0.8], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y+x"], "truth_formula":["x~z"], "prediction_accuracy":[0.85]}' --outfile $@
 231
 232 robustness_3_jobs_p3: grid_sweep.py 01_two_covariates.R simulation_base.R grid_sweep.py
 233         rm -f $@
 234         ${srun} $< --command 'Rscript 01_two_covariates.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_3.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3],"Px":[0.9,0.95], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y+x"], "truth_formula":["x~z"], "prediction_accuracy":[0.85]}' --outfile $@
 235
 236 START=0
 237 END_1=$(shell cat robustness_3_jobs_p1 | wc -l)
 238 END_2=$(shell cat robustness_3_jobs_p2 | wc -l)
 239 END_3=$(shell cat robustness_3_jobs_p3 | wc -l)
 240
 241 STEP=1000
 242 ONE=1
 243 ITEMS_1=$(shell seq $(START) $(STEP) $(END_1))
 244 ITEMS_2=$(shell seq $(START) $(STEP) $(END_2))
 245 ITEMS_3=$(shell seq $(START) $(STEP) $(END_3))
 246
 247 robustness_3.feather: robustness_3_jobs_p1 robustness_3_jobs_p2 robustness_3_jobs_p3
 248         $(foreach item,$(ITEMS_1),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_3_jobs_p1)
 249         $(foreach item,$(ITEMS_2),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_3_jobs_p2;)
 250         $(foreach item,$(ITEMS_3),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_3_jobs_p3;)
 251
 252
 253 robustness_3_dv_jobs_p1: grid_sweep.py 03_depvar.R simulation_base.R grid_sweep.py
 254         rm -f $@
 255         ${srun} $< --command 'Rscript 03_depvar.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_3.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3],"B0":[0.5,0.6], "outcome_formula":["y~x+z"], "prediction_accuracy":[0.85]}' --outfile $@
 256
 257 robustness_3_dv_jobs_p2: grid_sweep.py 03_depvar.R simulation_base.R grid_sweep.py
 258         rm -f $@
 259         ${srun} $< --command 'Rscript 03_depvar.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_3.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3],"B0":[0.7,0.8], "outcome_formula":["y~x+z"], "prediction_accuracy":[0.85]}' --outfile $@
 260
 261 robustness_3_dv_jobs_p3: grid_sweep.py 03_depvar.R simulation_base.R grid_sweep.py
 262         rm -f $@
 263         ${srun} $< --command 'Rscript 03_depvar.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_3.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "B0":[0.9,0.95], "outcome_formula":["y~x+z"], "prediction_accuracy":[0.85]}' --outfile $@
 264
 265 START=0
 266 END_1=$(shell cat robustness_3_dv_jobs_p1 | wc -l)
 267 END_2=$(shell cat robustness_3_dv_jobs_p2 | wc -l)
 268 END_3=$(shell cat robustness_3_dv_jobs_p3 | wc -l)
 269
 270 STEP=1000
 271 ONE=1
 272 ITEMS_1=$(shell seq $(START) $(STEP) $(END_1))
 273 ITEMS_2=$(shell seq $(START) $(STEP) $(END_2))
 274 ITEMS_3=$(shell seq $(START) $(STEP) $(END_3))
 275
 276 robustness_3_dv.feather: robustness_3_dv_jobs_p1 robustness_3_dv_jobs_p2 robustness_3_dv_jobs_p3
 277         $(foreach item,$(ITEMS_1),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_3_dv_jobs_p1)
 278         $(foreach item,$(ITEMS_2),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_3_dv_jobs_p2;)
 279         $(foreach item,$(ITEMS_3),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_3_dv_jobs_p3;)
 280
 281
 282
 283 robustness_4_jobs_p1: grid_sweep.py 02_indep_differential.R simulation_base.R grid_sweep.py
 284         rm -f $@
 285         ${srun} $< --command 'Rscript 02_indep_differential.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_4.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y+x"], "truth_formula":["x~z"], "prediction_accuracy":[0.85],y_bias=[-1,-0.85]}' --outfile $@
 286
 287 robustness_4_jobs_p2: grid_sweep.py 02_indep_differential.R simulation_base.R grid_sweep.py
 288         rm -f $@
 289         ${srun} $< --command 'Rscript 02_indep_differential.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_4.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y+x"], "truth_formula":["x~z"], "prediction_accuracy":[0.85], y_bias=[-0.70,-0.55]}' --outfile $@
 290
 291 robustness_4_jobs_p3: grid_sweep.py 02_indep_differential.R simulation_base.R grid_sweep.py
 292         rm -f $@
 293         ${srun} $< --command 'Rscript 02_indep_differential.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_4.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y+x"], "truth_formula":["x~z"], "prediction_accuracy":[0.85],y_bias=[-0.4,-0.25]}' --outfile $@
 294
 295 robustness_4_jobs_p4: grid_sweep.py 02_indep_differential.R simulation_base.R grid_sweep.py
 296         rm -f $@
 297         ${srun} $< --command 'Rscript 02_indep_differential.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_4.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y+x"], "truth_formula":["x~z"], "prediction_accuracy":[0.85],y_bias=[-0.1,0]}' --outfile $@
 298
 299 START=0
 300 END_1=$(shell cat robustness_4_jobs_p1 | wc -l)
 301 END_2=$(shell cat robustness_4_jobs_p2 | wc -l)
 302 END_3=$(shell cat robustness_4_jobs_p3 | wc -l)
 303 END_4=$(shell cat robustness_4_jobs_p3 | wc -l)
 304
 305 STEP=1000
 306 ONE=1
 307 ITEMS_1=$(shell seq $(START) $(STEP) $(END_1))
 308 ITEMS_2=$(shell seq $(START) $(STEP) $(END_2))
 309 ITEMS_3=$(shell seq $(START) $(STEP) $(END_3))
 310 ITEMS_4=$(shell seq $(START) $(STEP) $(END_4))
 311
 312 robustness_4.feather: robustness_4_jobs_p1 robustness_4_jobs_p2 robustness_4_jobs_p3
 313         $(foreach item,$(ITEMS_1),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_4_jobs_p1)
 314         $(foreach item,$(ITEMS_2),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_4_jobs_p2;)
 315         $(foreach item,$(ITEMS_3),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_4_jobs_p3;)
 316
 317
 318 robustness_4_dv_jobs_p1: grid_sweep.py 03_depvar.R simulation_base.R grid_sweep.py
 319         rm -f $@
 320         ${srun} $< --command 'Rscript 03_depvar.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_4.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3],"B0":[0.5] "outcome_formula":["y~x+z"], "prediction_accuracy":[0.85],z_bias=[0,0.1]}' --outfile $@
 321
 322 robustness_4_dv_jobs_p2: grid_sweep.py 03_depvar.R simulation_base.R grid_sweep.py
 323         rm -f $@
 324         ${srun} $< --command 'Rscript 03_depvar.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_4.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3],"B0":[0.5] "outcome_formula":["y~x+z"], "prediction_accuracy":[0.85],z_bias=[0.25,0.4]}' --outfile $@
 325
 326 robustness_4_dv_jobs_p3: grid_sweep.py 03_depvar.R simulation_base.R grid_sweep.py
 327         rm -f $@
 328         ${srun} $< --command 'Rscript 03_depvar.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_4.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "B0":[0.5], "outcome_formula":["y~x+z"], "prediction_accuracy":[0.85],z_bias=[0.55,0.7]}' --outfile $@
 329 robustness_4_dv_jobs_p4: grid_sweep.py 03_depvar.R simulation_base.R grid_sweep.py
 330         rm -f $@
 331         ${srun} $< --command 'Rscript 03_depvar.R'  --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_4.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "B0":[0.5], "outcome_formula":["y~x+z"], "prediction_accuracy":[0.85],z_bias=[0.85,1]}' --outfile $@
 332
 333
 334 START=0
 335 END_1=$(shell cat robustness_4_dv_jobs_p1 | wc -l)
 336 END_2=$(shell cat robustness_4_dv_jobs_p2 | wc -l)
 337 END_3=$(shell cat robustness_4_dv_jobs_p3 | wc -l)
 338
 339 STEP=1000
 340 ONE=1
 341 ITEMS_1=$(shell seq $(START) $(STEP) $(END_1))
 342 ITEMS_2=$(shell seq $(START) $(STEP) $(END_2))
 343 ITEMS_3=$(shell seq $(START) $(STEP) $(END_3))
 344
 345 robustness_4_dv.feather: robustness_4_dv_jobs_p1 robustness_4_dv_jobs_p2 robustness_4_dv_jobs_p3
 346         $(foreach item,$(ITEMS_1),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_4_dv_jobs_p1)
 347         $(foreach item,$(ITEMS_2),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_4_dv_jobs_p2;)
 348         $(foreach item,$(ITEMS_3),sbatch --wait --verbose --array=$(shell expr $(item) + $(ONE))-$(shell expr $(item) + $(STEP)) run_simulation.sbatch 0 robustness_4_dv_jobs_p3;)
 349
 350 #
 351 clean:
 352         rm *.feather
 353         rm -f remembr.RDS
 354         rm -f example_*_jobs
 355 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_jobs
 356
 357 # example_2_B_mecor_jobs:
 358 #       sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript example_2_B_mecor.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B_mecor.feather"]}' --outfile example_2_B_mecor_jobs
 359
 360 # example_2_B_mecor.feather:example_2_B_mecor.R example_2_B_mecor_jobs
 361 #       rm -f example_2_B_mecor.feather
 362 #       sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_mecor_jobs
 363 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_mecor_jobs
 364
 365
 366
 367 .PHONY: supplement