update real data examples code and rerun project.

[ml_measurement_error_public.git] / simulations / run_simulation.sbatch

diff --git a/simulations/run_simulation.sbatch b/simulations/run_simulation.sbatch
index 54f56bef90625764e39be20000a4b35e98d6c501..f5db415561de015f3410cf98f94f44b6cf27db2b 100644 (file)
--- a/simulations/run_simulation.sbatch
+++ b/simulations/run_simulation.sbatch
@@ -1,21 +1,23 @@
 #!/bin/bash
 #SBATCH --job-name="simulate measurement error models"
 ## Allocation Definition
 #!/bin/bash
 #SBATCH --job-name="simulate measurement error models"
 ## Allocation Definition

-#SBATCH --account=comdata
-#SBATCH --partition=compute-bigmem
+#SBATCH --account=comdata-ckpt
+#SBATCH --partition=ckpt

 ## Resources
 #SBATCH --nodes=1    
 ## Resources
 #SBATCH --nodes=1    

-## Walltime (12 hours)
-#SBATCH --time=1:00:00
+## Walltime (4 hours)
+#SBATCH --time=4:00:00

 ## Memory per node
 ## Memory per node

-#SBATCH --mem=8G
+#SBATCH --mem=4G

 #SBATCH --cpus-per-task=1
 #SBATCH --ntasks-per-node=1
 #SBATCH --chdir /gscratch/comdata/users/nathante/ml_measurement_error_public/simulations
 #SBATCH --output=simulation_jobs/%A_%a.out
 #SBATCH --error=simulation_jobs/%A_%a.err
 #SBATCH --cpus-per-task=1
 #SBATCH --ntasks-per-node=1
 #SBATCH --chdir /gscratch/comdata/users/nathante/ml_measurement_error_public/simulations
 #SBATCH --output=simulation_jobs/%A_%a.out
 #SBATCH --error=simulation_jobs/%A_%a.err

+source ~/.bashrc

 
 TASK_NUM=$(($SLURM_ARRAY_TASK_ID + $1))
 TASK_CALL=$(sed -n ${TASK_NUM}p $2)
 
 TASK_NUM=$(($SLURM_ARRAY_TASK_ID + $1))
 TASK_CALL=$(sed -n ${TASK_NUM}p $2)

+echo ${TASK_CALL}

 ${TASK_CALL}
 
 ${TASK_CALL}