SHELL=bash
-Ns=[500,1000,10000,25000]
-ms=[50, 100, 250, 500]
-seeds=[$(shell seq -s, 1 250)]
+Ns=[1000, 2000, 4000, 8000]
+ms=[100, 200, 400, 800]
+seeds=[$(shell seq -s, 1 100)]
+explained_variances=[0.1]
+
all:remembr.RDS
-srun=srun -A comdata -p compute-bigmem --time=10:00:00 --mem 4G -c 1
+srun=srun -A comdata -p compute-bigmem --time=6:00:00 --mem 4G -c 1
+
+
+joblists:example_1_jobs example_2_jobs example_3_jobs
+
+# test_true_z_jobs: test_true_z.R simulation_base.R
+# grid_sweep.py --command "Rscript test_true_z.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["test_true_z.feather"], "y_explained_variancevari":${explained_variances}, "Bzx":${Bzx}}' --outfile test_true_z_jobsb
+
+# test_true_z.feather: test_true_z_jobs
+# rm -f test_true_z.feather
+# sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 test_true_z_jobs
+# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 test_true_z_jobs
-example_1_jobs: 01_two_covariates.R simulation_base.R grid_sweep.py
- grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"]}' --outfile example_1_jobs
-example_1.feather: example_1_jobs
+example_1_jobs: 01_two_covariates.R simulation_base.R
+ grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"], "y_explained_variance":${explained_variances}, "Bzx":[0.1]}' --outfile example_1_jobs
+
+example_1.feather: example_1_jobs
rm -f example_1.feather
- sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_1_jobs
- sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs
+ sbatch --wait --verbose --array=1-$(shell cat example_1_jobs | wc -l) run_simulation.sbatch 0 example_1_jobs
+# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs
-example_2_jobs: example_2.R
- grid_sweep.py --command "Rscript 02_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"]}' --outfile example_2_jobs
+example_2_jobs: 02_indep_differential.R simulation_base.R
+ grid_sweep.py --command "Rscript 02_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"],"y_explained_variance":${explained_variances}, "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y*z*x"], "truth_formula":["x~z"]}' --outfile example_2_jobs
-example_2.feather: example_2_jobs
+example_2.feather: example_2_jobs
rm -f example_2.feather
- sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_jobs
- sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_jobs
+ sbatch --wait --verbose --array=1-$(shell cat example_2_jobs | wc -l) run_simulation.sbatch 0 example_2_jobs
+# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_jobs
-example_2_B_jobs: example_2_B.R
- grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs
+# example_2_B_jobs: example_2_B.R
+# grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs
-example_2_B.feather: example_2_B_jobs
- rm -f example_2_B.feather
- sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs
+# example_2_B.feather: example_2_B_jobs
+# rm -f example_2_B.feather
+# sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs
-example_3_jobs: example_3.R
- grid_sweep.py --command "Rscript example_3.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"]}' --outfile example_3_jobs
+example_3_jobs: 03_depvar.R simulation_base.R
+ grid_sweep.py --command "Rscript 03_depvar.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"], "y_explained_variance":${explained_variances}}' --outfile example_3_jobs
example_3.feather: example_3_jobs
- rm -f example_3.feather
- sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_3_jobs
+ rm -f example_3.feather
+ sbatch --wait --verbose --array=1-$(shell cat example_3_jobs | wc -l) run_simulation.sbatch 0 example_3_jobs
+
+example_4_jobs: 04_depvar_differential.R simulation_base.R
+ grid_sweep.py --command "Rscript 04_depvar_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_4.feather"], "y_explained_variance":${explained_variances}}' --outfile example_4_jobs
+example_4.feather: example_4_jobs
+ rm -f example_4.feather
+ sbatch --wait --verbose --array=1-$(shell cat example_4_jobs | wc -l) run_simulation.sbatch 0 example_4_jobs
-remembr.RDS:example_2_B.feather example_1.feather example_2.feather example_3.feather
+remembr.RDS:example_1.feather example_2.feather example_3.feather example_4.feather plot_example.R plot_dv_example.R
+ rm -f remembr.RDS
${srun} Rscript plot_example.R --infile example_1.feather --name "plot.df.example.1"
${srun} Rscript plot_example.R --infile example_2.feather --name "plot.df.example.2"
- ${srun} Rscript plot_example.R --infile example_2_B.feather --name "plot.df.example.2B"
- ${srun} Rscript plot_example.R --infile example_3.feather --name "plot.df.example.3"
-
-
+ ${srun} Rscript plot_dv_example.R --infile example_3.feather --name "plot.df.example.3"
+ ${srun} Rscript plot_dv_example.R --infile example_4.feather --name "plot.df.example.4"
+clean:
+ rm *.feather
+ rm -f remembr.RDS
+ rm -f example_*_jobs
# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_jobs
# example_2_B_mecor_jobs:
projects / ml_measurement_error_public.git / blobdiff