]> code.communitydata.science - cdsc_reddit.git/blob - term_cosine_similarity.py
Add code for running tf-idf at the weekly level.
[cdsc_reddit.git] / term_cosine_similarity.py
1 from pyspark.sql import functions as f
2 from pyspark.sql import SparkSession
3 from pyspark.sql import Window
4 from pyspark.mllib.linalg.distributed import RowMatrix, CoordinateMatrix
5 import numpy as np
6 import pyarrow
7 import pandas as pd
8 import fire
9 from itertools import islice
10 from pathlib import Path
11 from similarities_helper import cosine_similarities, prep_tfidf_entries, read_tfidf_matrix, column_similarities
12 import scipy
13 # outfile='test_similarities_500.feather';
14 # min_df = None;
15 # included_subreddits=None; topN=100; exclude_phrases=True;
16
17 def term_cosine_similarities(outfile, min_df = None, included_subreddits=None, topN=500, exclude_phrases=False):
18     spark = SparkSession.builder.getOrCreate()
19     conf = spark.sparkContext.getConf()
20     print(outfile)
21     print(exclude_phrases)
22
23     tfidf = spark.read.parquet('/gscratch/comdata/users/nathante/subreddit_tfidf.parquet')
24
25     if included_subreddits is None:
26         rankdf = pd.read_csv("/gscratch/comdata/users/nathante/cdsc-reddit/subreddits_by_num_comments.csv")
27         included_subreddits = set(rankdf.loc[rankdf.comments_rank <= topN,'subreddit'].values)
28
29     else:
30         included_subreddits = set(open(included_subreddits))
31
32     if exclude_phrases == True:
33         tfidf = tfidf.filter(~f.col(term).contains("_"))
34
35     print("creating temporary parquet with matrix indicies")
36     tempdir = prep_tfidf_entries(tfidf, 'term', min_df, included_subreddits)
37     tfidf = spark.read.parquet(tempdir.name)
38     subreddit_names = tfidf.select(['subreddit','subreddit_id_new']).distinct().toPandas()
39     subreddit_names = subreddit_names.sort_values("subreddit_id_new")
40     subreddit_names['subreddit_id_new'] = subreddit_names['subreddit_id_new'] - 1
41     spark.stop()
42
43     print("loading matrix")
44     mat = read_tfidf_matrix(tempdir.name,'term')
45     print('computing similarities')
46     sims = column_similarities(mat)
47     del mat
48     
49     sims = pd.DataFrame(sims.todense())
50     sims = sims.rename({i:sr for i, sr in enumerate(subreddit_names.subreddit.values)},axis=1)
51     sims['subreddit'] = subreddit_names.subreddit.values
52
53     p = Path(outfile)
54
55     output_feather =  Path(str(p).replace("".join(p.suffixes), ".feather"))
56     output_csv =  Path(str(p).replace("".join(p.suffixes), ".csv"))
57     output_parquet =  Path(str(p).replace("".join(p.suffixes), ".parquet"))
58
59     sims.to_feather(outfile)
60     tempdir.cleanup()
61     path = "term_tfidf_entriesaukjy5gv.parquet"
62     
63
64 # outfile = '/gscratch/comdata/users/nathante/test_similarities_500.feather'; min_df = None; included_subreddits=None; similarity_threshold=0;
65 # def term_cosine_similarities(outfile, min_df = None, included_subreddits=None, similarity_threshold=0, topN=500, exclude_phrases=True):
66 #     '''
67 #     Compute similarities between subreddits based on tfi-idf vectors of comment texts 
68     
69 #     included_subreddits : string
70 #         Text file containing a list of subreddits to include (one per line) if included_subreddits is None then do the top 500 subreddits
71
72 #     similarity_threshold : double (default = 0)
73 #         set > 0 for large numbers of subreddits to get an approximate solution using the DIMSUM algorithm
74 # https://stanford.edu/~rezab/papers/dimsum.pdf. If similarity_threshold=0 we get an exact solution using an O(N^2) algorithm.
75
76 #     min_df : int (default = 0.1 * (number of included_subreddits)
77 #          exclude terms that appear in fewer than this number of documents.
78
79 #     outfile: string
80 #          where to output csv and feather outputs
81 # '''
82
83 #     print(outfile)
84 #     print(exclude_phrases)
85
86 #     tfidf = spark.read.parquet('/gscratch/comdata/users/nathante/subreddit_tfidf.parquet')
87
88 #     if included_subreddits is None:
89 #         included_subreddits = list(islice(open("/gscratch/comdata/users/nathante/cdsc-reddit/top_25000_subs_by_comments.txt"),topN))
90 #         included_subreddits = {s.strip('\n') for s in included_subreddits}
91
92 #     else:
93 #         included_subreddits = set(open(included_subreddits))
94
95 #     if exclude_phrases == True:
96 #         tfidf = tfidf.filter(~f.col(term).contains("_"))
97
98 #     sim_dist, tfidf = cosine_similarities(tfidf, 'term', min_df, included_subreddits, similarity_threshold)
99
100 #     p = Path(outfile)
101
102 #     output_feather =  Path(str(p).replace("".join(p.suffixes), ".feather"))
103 #     output_csv =  Path(str(p).replace("".join(p.suffixes), ".csv"))
104 #     output_parquet =  Path(str(p).replace("".join(p.suffixes), ".parquet"))
105
106 #     sim_dist.entries.toDF().write.parquet(str(output_parquet),mode='overwrite',compression='snappy')
107     
108 #     #instead of toLocalMatrix() why not read as entries and put strait into numpy
109 #     sim_entries = pd.read_parquet(output_parquet)
110
111 #     df = tfidf.select('subreddit','subreddit_id_new').distinct().toPandas()
112 #     spark.stop()
113 #     df['subreddit_id_new'] = df['subreddit_id_new'] - 1
114 #     df = df.sort_values('subreddit_id_new').reset_index(drop=True)
115 #     df = df.set_index('subreddit_id_new')
116
117 #     similarities = sim_entries.join(df, on='i')
118 #     similarities = similarities.rename(columns={'subreddit':"subreddit_i"})
119 #     similarities = similarities.join(df, on='j')
120 #     similarities = similarities.rename(columns={'subreddit':"subreddit_j"})
121
122 #     similarities.to_feather(output_feather)
123 #     similarities.to_csv(output_csv)
124 #     return similarities
125     
126 if __name__ == '__main__':
127     fire.Fire(term_cosine_similarities)

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