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refactor example charts
[ml_measurement_error_public.git] / simulations / Makefile
1
2 SHELL=bash
3
4 Ns=[1000, 2000, 4000, 8000]
5 ms=[100, 200, 400, 800]
6 seeds=[$(shell seq -s, 1 100)]
7 explained_variances=[0.1]
8
9 all:remembr.RDS
10
11 srun=srun -A comdata -p compute-bigmem --time=6:00:00 --mem 4G -c 1
12
13
14 joblists:example_1_jobs example_2_jobs example_3_jobs
15
16 # test_true_z_jobs: test_true_z.R simulation_base.R
17 #       grid_sweep.py --command "Rscript test_true_z.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["test_true_z.feather"], "y_explained_variancevari":${explained_variances}, "Bzx":${Bzx}}' --outfile test_true_z_jobsb
18
19 # test_true_z.feather: test_true_z_jobs 
20 #       rm -f test_true_z.feather
21 #       sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 test_true_z_jobs
22 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 test_true_z_jobs
23
24
25 example_1_jobs: 01_two_covariates.R simulation_base.R
26         grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"], "y_explained_variance":${explained_variances}, "Bzx":[0.1]}' --outfile example_1_jobs
27
28 example_1.feather: example_1_jobs 
29         rm -f example_1.feather
30         sbatch --wait --verbose --array=1-$(shell cat example_1_jobs | wc -l) run_simulation.sbatch 0 example_1_jobs
31 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs
32
33 example_2_jobs: 02_indep_differential.R simulation_base.R
34         grid_sweep.py --command "Rscript 02_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y*z*x"], "truth_formula":["x~z"]}' --outfile example_2_jobs
35
36 example_2.feather: example_2_jobs 
37         rm -f example_2.feather
38         sbatch --wait --verbose --array=1-$(shell cat example_2_jobs | wc -l) run_simulation.sbatch 0 example_2_jobs
39 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_jobs
40
41 # example_2_B_jobs: example_2_B.R
42 #       grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs
43
44 # example_2_B.feather: example_2_B_jobs
45 #       rm -f example_2_B.feather
46 #       sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs
47
48 example_3_jobs: 03_depvar.R simulation_base.R
49         grid_sweep.py --command "Rscript 03_depvar.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"], "y_explained_variance":${explained_variances}}' --outfile example_3_jobs
50
51 example_3.feather: example_3_jobs
52         rm -f example_3.feather 
53         sbatch --wait --verbose --array=1-$(shell cat example_3_jobs | wc -l)  run_simulation.sbatch 0 example_3_jobs
54
55 example_4_jobs: 04_depvar_differential.R simulation_base.R
56         grid_sweep.py --command "Rscript 04_depvar_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_4.feather"], "y_explained_variance":${explained_variances}}' --outfile example_4_jobs
57
58 example_4.feather: example_4_jobs
59         rm -f example_4.feather 
60         sbatch --wait --verbose --array=1-$(shell cat example_4_jobs | wc -l)  run_simulation.sbatch 0 example_4_jobs
61
62 remembr.RDS:example_1.feather example_2.feather example_3.feather example_4.feather plot_example.R plot_dv_example.R
63         rm -f remembr.RDS
64         ${srun} Rscript plot_example.R --infile example_1.feather --name "plot.df.example.1"
65         ${srun} Rscript plot_example.R --infile example_2.feather --name "plot.df.example.2"
66         ${srun} Rscript plot_dv_example.R --infile example_3.feather --name "plot.df.example.3"
67         ${srun} Rscript plot_dv_example.R --infile example_4.feather --name "plot.df.example.4"
68
69 clean:
70         rm *.feather
71         rm -f remembr.RDS
72         rm -f example_*_jobs
73 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_jobs
74
75 # example_2_B_mecor_jobs:
76 #       grid_sweep.py --command "Rscript example_2_B_mecor.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B_mecor.feather"]}' --outfile example_2_B_mecor_jobs
77
78 # example_2_B_mecor.feather:example_2_B_mecor.R example_2_B_mecor_jobs
79 #       rm -f example_2_B_mecor.feather
80 #       sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_mecor_jobs
81 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_mecor_jobs
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