simulations/Makefile

   1
   2 SHELL=bash
   3
   4 Ns=[1000, 2000, 4000]
   5 ms=[100, 200, 400, 800]
   6 seeds=[$(shell seq -s, 1 250)]
   7 explained_variances=[0.1]
   8
   9 all:remembr.RDS remember_irr.RDS
  10 supplement: remember_robustness_misspec.RDS
  11
  12 srun=sbatch --wait --verbose run_job.sbatch
  13
  14
  15 joblists:example_1_jobs example_2_jobs example_3_jobs
  16
  17 # test_true_z_jobs: test_true_z.R simulation_base.R
  18 #       sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript test_true_z.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["test_true_z.feather"], "y_explained_variancevari":${explained_variances}, "Bzx":${Bzx}}' --outfile test_true_z_jobsb
  19
  20 # test_true_z.feather: test_true_z_jobs
  21 #       rm -f test_true_z.feather
  22 #       sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 test_true_z_jobs
  23 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 test_true_z_jobs
  24
  25
  26 example_1_jobs: 01_two_covariates.R simulation_base.R grid_sweep.py
  27         sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"], "y_explained_variance":${explained_variances}, "Bzx":[0.3]}' --outfile example_1_jobs
  28
  29 example_1.feather: example_1_jobs
  30         rm -f example_1.feather
  31         sbatch --wait --verbose --array=1-$(shell cat example_1_jobs | wc -l) run_simulation.sbatch 0 example_1_jobs
  32 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs
  33
  34 example_2_jobs: 02_indep_differential.R simulation_base.R grid_sweep.py
  35         sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 02_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y*z*x"]}' --outfile example_2_jobs
  36
  37 example_2.feather: example_2_jobs
  38         rm -f example_2.feather
  39         sbatch --wait --verbose --array=1-$(shell cat example_1_jobs | wc -l) run_simulation.sbatch 0 example_2_jobs
  40 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_jobs
  41
  42 # example_2_B_jobs: example_2_B.R
  43 #       sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs
  44
  45 # example_2_B.feather: example_2_B_jobs
  46 #       rm -f example_2_B.feather
  47 #       sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs
  48
  49 example_3_jobs: 03_depvar.R simulation_base.R grid_sweep.py
  50         sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 03_depvar.R" --arg_dict '{"N":${Ns},"m":${ms}, "Bxy":[0.01],"Bzy":[-0.01],"seed":${seeds}, "outfile":["example_3.feather"], "y_explained_variance":${explained_variances}}' --outfile example_3_jobs
  51
  52 example_3.feather: example_3_jobs
  53         rm -f example_3.feather
  54         sbatch --wait --verbose --array=1-$(shell cat example_3_jobs | wc -l)  run_simulation.sbatch 0 example_3_jobs
  55
  56 example_4_jobs: 04_depvar_differential.R simulation_base.R grid_sweep.py
  57         sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 04_depvar_differential.R" --arg_dict '{"N":${Ns},"Bxy":[0.01],"Bzy":[-0.01],"m":${ms}, "seed":${seeds}, "outfile":["example_4.feather"], "y_explained_variance":${explained_variances}}' --outfile example_4_jobs
  58
  59 example_4.feather: example_4_jobs
  60         rm -f example_4.feather
  61         sbatch --wait --verbose --array=1-$(shell cat example_4_jobs | wc -l)  run_simulation.sbatch 0 example_4_jobs
  62
  63
  64 remembr.RDS:example_1.feather example_2.feather example_3.feather example_4.feather plot_example.R plot_dv_example.R summarize_estimator.R
  65         rm -f remembr.RDS
  66         ${srun} Rscript plot_example.R --infile example_1.feather --name "plot.df.example.1"
  67         ${srun} Rscript plot_example.R --infile example_2.feather --name "plot.df.example.2"
  68         ${srun} Rscript plot_dv_example.R --infile example_3.feather --name "plot.df.example.3"
  69         ${srun} Rscript plot_dv_example.R --infile example_4.feather --name "plot.df.example.4"
  70
  71
  72 irr_Ns = ${Ns}
  73 irr_ms = ${ms}
  74 irr_seeds=${seeds}
  75 irr_explained_variances=${explained_variances}
  76
  77 example_5_jobs: 05_irr_indep.R irr_simulation_base.R grid_sweep.py
  78         sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 05_irr_indep.R" --arg_dict '{"N":${irr_Ns},"m":${irr_ms}, "seed":${irr_seeds}, "outfile":["example_5.feather"], "y_explained_variance":${irr_explained_variances}}' --outfile example_5_jobs
  79
  80 example_5.feather:example_5_jobs
  81         rm -f example_5.feather
  82         sbatch --wait --verbose --array=1-$(shell cat example_5_jobs | wc -l)  run_simulation.sbatch 0 example_5_jobs
  83
  84
  85 example_6_jobs: 06_irr_dv.R irr_dv_simulation_base.R grid_sweep.py
  86         sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 06_irr_dv.R" --arg_dict '{"N":${irr_Ns},"m":${irr_ms}, "seed":${irr_seeds}, "outfile":["example_6.feather"], "y_explained_variance":${irr_explained_variances}}' --outfile example_6_jobs
  87
  88 example_6.feather:example_6_jobs
  89         rm -f example_6.feather
  90         sbatch --wait --verbose --array=1-$(shell cat example_6_jobs | wc -l)  run_simulation.sbatch 0 example_6_jobs
  91
  92 remember_irr.RDS: example_5.feather example_6.feather plot_irr_example.R plot_irr_dv_example.R summarize_estimator.R
  93         rm -f remember_irr.RDS
  94         sbatch --wait --verbose run_job.sbatch Rscript plot_irr_example.R --infile example_5.feather --name "plot.df.example.5"
  95         sbatch --wait --verbose run_job.sbatch Rscript plot_irr_dv_example.R --infile example_6.feather --name "plot.df.example.6"
  96
  97
  98
  99 robustness_1_jobs: 02_indep_differential.R simulation_base.R grid_sweep.py
 100         sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 02_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_1.feather"],"y_explained_variance":${explained_variances},  "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y+x"], "truth_formula":["x~1"]}' --outfile robustness_1_jobs
 101
 102
 103
 104 robustness_1.feather: robustness_1_jobs
 105         rm -f robustness_1.feather
 106         sbatch --wait --verbose --array=1-$(shell cat robustness_1_jobs | wc -l)  run_simulation.sbatch 0 robustness_1_jobs
 107
 108 robustness_1_dv_jobs: simulation_base.R 04_depvar_differential.R grid_sweep.py
 109         ${srun} bash -c "source ~/.bashrc && grid_sweep.py --command 'Rscript 04_depvar_differential.R' --arg_dict \"{'N':${Ns},'m':${ms}, 'seed':${seeds}, 'outfile':['robustness_1_dv.feather'], 'y_explained_variance':${explained_variances}, 'proxy_formula':['w_pred~y']}\" --outfile robustness_1_dv_jobs"
 110
 111
 112 robustness_1_dv.feather: robustness_1_dv_jobs
 113         rm -f robustness_1_dv.feather
 114         sbatch --wait --verbose --array=1-$(shell cat example_3_jobs | wc -l)  run_simulation.sbatch 0 robustness_1_dv_jobs
 115
 116
 117 remember_robustness_misspec.RDS: robustness_1.feather robustness_1_dv.feather
 118         rm -f remember_robustness_misspec.RDS
 119         sbatch --wait --verbose run_job.sbatch Rscript plot_example.R --infile robustness_1.feather --name "plot.df.robustness.1" --remember-file "remember_robustness_misspec.RDS"
 120         sbatch --wait --verbose run_job.sbatch Rscript plot_dv_example.R --infile robustness_1_dv.feather --name "plot.df.robustness.1.dv" --remember-file "remember_robustness_mispec.RDS"
 121
 122
 123 clean:
 124         rm *.feather
 125         rm -f remembr.RDS
 126         rm -f example_*_jobs
 127 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_jobs
 128
 129 # example_2_B_mecor_jobs:
 130 #       sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript example_2_B_mecor.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B_mecor.feather"]}' --outfile example_2_B_mecor_jobs
 131
 132 # example_2_B_mecor.feather:example_2_B_mecor.R example_2_B_mecor_jobs
 133 #       rm -f example_2_B_mecor.feather
 134 #       sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_mecor_jobs
 135 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_mecor_jobs
 136
 137
 138
 139 .PHONY: supplement