]> code.communitydata.science - ml_measurement_error_public.git/blob - simulations/Makefile
Add simulation of listwise deletion and averaging of labeled-only estimators
[ml_measurement_error_public.git] / simulations / Makefile
1
2 SHELL=bash
3
4 Ns=[1000,3600,14400]
5 ms=[75,150,300]
6 seeds=[$(shell seq -s, 1 250)]
7 explained_variances=[0.1]
8
9 all:remembr.RDS
10
11 srun=srun -A comdata -p compute-bigmem --time=6:00:00 --mem 4G -c 1
12
13
14 joblists:example_1_jobs example_2_jobs example_3_jobs
15
16 # test_true_z_jobs: test_true_z.R simulation_base.R
17 #       grid_sweep.py --command "Rscript test_true_z.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["test_true_z.feather"], "y_explained_variancevari":${explained_variances}, "Bzx":${Bzx}}' --outfile test_true_z_jobsb
18
19 # test_true_z.feather: test_true_z_jobs 
20 #       rm -f test_true_z.feather
21 #       sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 test_true_z_jobs
22 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 test_true_z_jobs
23
24
25 example_1_jobs: 01_two_covariates.R simulation_base.R
26         grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"], "y_explained_variance":${explained_variances}, "Bzx":[0.1]}' --outfile example_1_jobs
27
28 example_1.feather: example_1_jobs 
29         rm -f example_1.feather
30         sbatch --wait --verbose --array=1-$(shell cat example_1_jobs | wc -l) run_simulation.sbatch 0 example_1_jobs
31 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs
32
33 example_2_jobs: 02_indep_differential.R simulation_base.R
34         grid_sweep.py --command "Rscript 02_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"],"y_explained_variance":${explained_variances}, "accuracy_imbalance_difference":[0.3], "Bzy":[0.3]}' --outfile example_2_jobs
35
36 example_2.feather: example_2_jobs 
37         rm -f example_2.feather
38         sbatch --wait --verbose --array=1-$(shell cat example_2_jobs | wc -l) run_simulation.sbatch 0 example_2_jobs
39 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_jobs
40
41 # example_2_B_jobs: example_2_B.R
42 #       grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs
43
44 # example_2_B.feather: example_2_B_jobs
45 #       rm -f example_2_B.feather
46 #       sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs
47
48 example_3_jobs: 03_depvar_differential.R simulation_base.R
49         grid_sweep.py --command "Rscript 03_depvar_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"], "y_explained_variance":${explained_variances}}' --outfile example_3_jobs
50
51 example_3.feather: example_3_jobs
52         rm -f example_3.feather 
53         sbatch --wait --verbose --array=1-$(shell cat example_3_jobs | wc -l)  run_simulation.sbatch 0 example_3_jobs
54
55
56 remembr.RDS:example_1.feather example_2.feather example_3.feather plot_example.R plot_dv_example.R
57         rm -f remembr.RDS
58         ${srun} Rscript plot_example.R --infile example_1.feather --name "plot.df.example.1"
59         ${srun} Rscript plot_example.R --infile example_2.feather --name "plot.df.example.2"
60         ${srun} Rscript plot_dv_example.R --infile example_3.feather --name "plot.df.example.3"
61
62 clean:
63         rm *.feather
64         rm -f remembr.RDS
65         rm -f example_*_jobs
66 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_jobs
67
68 # example_2_B_mecor_jobs:
69 #       grid_sweep.py --command "Rscript example_2_B_mecor.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B_mecor.feather"]}' --outfile example_2_B_mecor_jobs
70
71 # example_2_B_mecor.feather:example_2_B_mecor.R example_2_B_mecor_jobs
72 #       rm -f example_2_B_mecor.feather
73 #       sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_mecor_jobs
74 #       sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_mecor_jobs
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