6 seeds=[$(shell seq -s, 1 500)]
7 explained_variances=[0.1]
9 all:remembr.RDS remember_irr.RDS
10 supplement: remember_robustness_misspec.RDS
12 srun=sbatch --wait --verbose run_job.sbatch
15 joblists:example_1_jobs example_2_jobs example_3_jobs
17 # test_true_z_jobs: test_true_z.R simulation_base.R
18 # sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript test_true_z.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["test_true_z.feather"], "y_explained_variancevari":${explained_variances}, "Bzx":${Bzx}}' --outfile test_true_z_jobsb
20 # test_true_z.feather: test_true_z_jobs
21 # rm -f test_true_z.feather
22 # sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 test_true_z_jobs
23 # sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 test_true_z_jobs
26 example_1_jobs: 01_two_covariates.R simulation_base.R grid_sweep.py pl_methods.R
27 sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"], "y_explained_variance":${explained_variances}, "Bzx":[1]}' --outfile example_1_jobs
29 example_1.feather: example_1_jobs
30 rm -f example_1.feather
31 sbatch --wait --verbose --array=1-1000 run_simulation.sbatch 0 example_1_jobs
32 sbatch --wait --verbose --array=1001-2000 run_simulation.sbatch 0 example_1_jobs
33 sbatch --wait --verbose --array=2001-3000 run_simulation.sbatch 0 example_1_jobs
34 sbatch --wait --verbose --array=3001-4000 run_simulation.sbatch 0 example_1_jobs
35 sbatch --wait --verbose --array=4001-$(shell cat example_1_jobs | wc -l) run_simulation.sbatch 0 example_1_jobs
37 example_2_jobs: 02_indep_differential.R simulation_base.R grid_sweep.py pl_methods.R
38 sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 02_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"],"y_explained_variance":${explained_variances}, "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[1], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y*z*x"]}' --outfile example_2_jobs
40 example_2.feather: example_2_jobs
41 rm -f example_2.feather
42 sbatch --wait --verbose --array=1-1000 run_simulation.sbatch 0 example_2_jobs
43 sbatch --wait --verbose --array=1001-2000 run_simulation.sbatch 0 example_2_jobs
44 sbatch --wait --verbose --array=2001-3000 run_simulation.sbatch 0 example_2_jobs
45 sbatch --wait --verbose --array=3001-4000 run_simulation.sbatch 0 example_2_jobs
46 sbatch --wait --verbose --array=4001-$(shell cat example_2_jobs | wc -l) run_simulation.sbatch 0 example_2_jobs
49 # example_2_B_jobs: example_2_B.R
50 # sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs
52 # example_2_B.feather: example_2_B_jobs
53 # rm -f example_2_B.feather
54 # sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs
56 example_3_jobs: 03_depvar.R simulation_base.R grid_sweep.py pl_methods.R
57 sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 03_depvar.R" --arg_dict '{"N":${Ns},"m":${ms}, "Bxy":[0.7],"Bzy":[-0.7],"seed":${seeds}, "outfile":["example_3.feather"], "y_explained_variance":${explained_variances}}' --outfile example_3_jobs
59 example_3.feather: example_3_jobs
60 rm -f example_3.feather
61 sbatch --wait --verbose --array=1-1000 run_simulation.sbatch 0 example_3_jobs
62 sbatch --wait --verbose --array=1001-2000 run_simulation.sbatch 0 example_3_jobs
63 sbatch --wait --verbose --array=2001-3000 run_simulation.sbatch 0 example_3_jobs
64 sbatch --wait --verbose --array=3001-4000 run_simulation.sbatch 0 example_3_jobs
65 sbatch --wait --verbose --array=4001-$(shell cat example_3_jobs | wc -l) run_simulation.sbatch 0 example_3_jobs
67 example_4_jobs: 04_depvar_differential.R simulation_base.R grid_sweep.py pl_methods.R
68 sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 04_depvar_differential.R" --arg_dict '{"N":${Ns},"Bxy":[0.7],"Bzy":[-0.7],"m":${ms}, "seed":${seeds}, "outfile":["example_4.feather"], "z_bias":[0.5]}' --outfile example_4_jobs
70 example_4.feather: example_4_jobs
71 rm -f example_4.feather
72 sbatch --wait --verbose --array=1-1000 run_simulation.sbatch 0 example_4_jobs
73 sbatch --wait --verbose --array=1001-2000 run_simulation.sbatch 0 example_4_jobs
74 sbatch --wait --verbose --array=2001-3000 run_simulation.sbatch 0 example_4_jobs
75 sbatch --wait --verbose --array=3001-4000 run_simulation.sbatch 0 example_4_jobs
76 sbatch --wait --verbose --array=4001-$(shell cat example_4_jobs | wc -l) run_simulation.sbatch 0 example_4_jobs
80 remembr.RDS:example_1.feather example_2.feather example_3.feather example_4.feather plot_example.R plot_dv_example.R summarize_estimator.R
82 ${srun} Rscript plot_example.R --infile example_1.feather --name "plot.df.example.1"
83 ${srun} Rscript plot_example.R --infile example_2.feather --name "plot.df.example.2"
84 ${srun} Rscript plot_dv_example.R --infile example_3.feather --name "plot.df.example.3"
85 ${srun} Rscript plot_dv_example.R --infile example_4.feather --name "plot.df.example.4"
89 irr_ms = [150,300,600]
91 irr_explained_variances=${explained_variances}
92 irr_coder_accuracy=[0.80]
94 example_5_jobs: 05_irr_indep.R irr_simulation_base.R grid_sweep.py pl_methods.R measerr_methods.R
95 sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 05_irr_indep.R" --arg_dict '{"N":${irr_Ns},"m":${irr_ms}, "seed":${irr_seeds}, "outfile":["example_5.feather"], "y_explained_variance":${irr_explained_variances}, "coder_accuracy":${irr_coder_accuracy}}' --outfile example_5_jobs
97 example_5.feather:example_5_jobs
98 rm -f example_5.feather
99 sbatch --wait --verbose --array=1-1000 run_simulation.sbatch 0 example_5_jobs
100 sbatch --wait --verbose --array=1001-$(shell cat example_5_jobs | wc -l) run_simulation.sbatch 1000 example_5_jobs
101 # sbatch --wait --verbose --array=2001-3000 run_simulation.sbatch 2000 example_5_jobs
102 # sbatch --wait --verbose --array=3001-4000 run_simulation.sbatch 3000 example_5_jobs
103 # sbatch --wait --verbose --array=2001-$(shell cat example_5_jobs | wc -l) run_simulation.sbatch 4000 example_5_jobs
107 # example_6_jobs: 06_irr_dv.R irr_dv_simulation_base.R grid_sweep.py pl_methods.R
108 # sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 06_irr_dv.R" --arg_dict '{"N":${irr_Ns},"m":${irr_ms}, "seed":${irr_seeds}, "outfile":["example_6.feather"], "y_explained_variance":${irr_explained_variances},"coder_accuracy":${irr_coder_accuracy}}' --outfile example_6_jobs
110 # example_6.feather:example_6_jobs
111 # rm -f example_6.feather
112 # sbatch --wait --verbose --array=1-1000 run_simulation.sbatch 0 example_6_jobs
113 # sbatch --wait --verbose --array=1001-2000 run_simulation.sbatch 1000 example_6_jobs
114 # sbatch --wait --verbose --array=2001-$(shell cat example_6_jobs | wc -l) run_simulation.sbatch 2000 example_6_jobs
117 remember_irr.RDS: example_5.feather plot_irr_example.R plot_irr_dv_example.R summarize_estimator.R
118 rm -f remember_irr.RDS
119 sbatch --wait --verbose run_job.sbatch Rscript plot_irr_example.R --infile example_5.feather --name "plot.df.example.5"
120 # sbatch --wait --verbose run_job.sbatch Rscript plot_irr_dv_example.R --infile example_6.feather --name "plot.df.example.6"
124 robustness_1_jobs: 02_indep_differential.R simulation_base.R grid_sweep.py
125 sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript 02_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["robustness_1.feather"],"y_explained_variance":${explained_variances}, "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y+x"], "truth_formula":["x~1"]}' --outfile robustness_1_jobs
129 robustness_1.feather: robustness_1_jobs
130 rm -f robustness_1.feather
131 sbatch --wait --verbose --array=1-$(shell cat robustness_1_jobs | wc -l) run_simulation.sbatch 0 robustness_1_jobs
133 robustness_1_dv_jobs: simulation_base.R 04_depvar_differential.R grid_sweep.py
134 ${srun} bash -c "source ~/.bashrc && grid_sweep.py --command 'Rscript 04_depvar_differential.R' --arg_dict \"{'N':${Ns},'m':${ms}, 'seed':${seeds}, 'outfile':['robustness_1_dv.feather'], 'y_explained_variance':${explained_variances}, 'proxy_formula':['w_pred~y']}\" --outfile robustness_1_dv_jobs"
137 robustness_1_dv.feather: robustness_1_dv_jobs
138 rm -f robustness_1_dv.feather
139 sbatch --wait --verbose --array=1-$(shell cat example_3_jobs | wc -l) run_simulation.sbatch 0 robustness_1_dv_jobs
142 remember_robustness_misspec.RDS: robustness_1.feather robustness_1_dv.feather
143 rm -f remember_robustness_misspec.RDS
144 sbatch --wait --verbose run_job.sbatch Rscript plot_example.R --infile robustness_1.feather --name "plot.df.robustness.1" --remember-file "remember_robustness_misspec.RDS"
145 sbatch --wait --verbose run_job.sbatch Rscript plot_dv_example.R --infile robustness_1_dv.feather --name "plot.df.robustness.1.dv" --remember-file "remember_robustness_mispec.RDS"
152 # sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_jobs
154 # example_2_B_mecor_jobs:
155 # sbatch --wait --verbose run_job.sbatch grid_sweep.py --command "Rscript example_2_B_mecor.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B_mecor.feather"]}' --outfile example_2_B_mecor_jobs
157 # example_2_B_mecor.feather:example_2_B_mecor.R example_2_B_mecor_jobs
158 # rm -f example_2_B_mecor.feather
159 # sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_mecor_jobs
160 # sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_mecor_jobs